BASiCS workflow: a step-by-step analysis of expression variability using single cell RNA sequencing data
- 1. University of Edinburgh
- 2. University of Zurich
- 3. European Molecular Biology Laboratory
Description
Files used in the generation of the manuscript "BASiCS workflow: a step-by-step analysis of expression variability using single cell RNA sequencing data". These files are MCMC chains generated using BASiCS, gene annotations, and scripts used to generate these files. "chain_(naive|active).Rds" files are MCMC chains for the active and naive cell populations in the manuscript. "chain_naive_nospikes.Rds" is an MCMC chain for naive cells run using BASiCS with the WithSpikes=FALSE setting. "chains.R" and "Makefile" were used to generate these files using the docker image "alanocallaghan/bocker:0.1.0", hosted on hub.docker.com
Alternatively, "Dockerfile" can be used to create an equivalent image.
"TableRef_naive_nospikes.txt" is a table containing the frequency that each gene was used as a reference gene during the generation of "chain_naive_nospikes.Rds".
Files
TableRef_naive_nospikes.txt
Files
(354.4 MB)
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