Biodiversity Literature Repository

Submit to community
Liberated Data
Published October 21, 2010 | Version v1
Journal article Restricted

Mitochondrial DNA genetic variation and phylogeography of the recently described vole species Proedromys liangshanensis Liu, Sun, Zeng and Zhao, 2007 (Rodentia: Arvicolinae)

Authors/Creators

Description

Chen, Weicai, Hao, Haibang, Liu, Yang, Chen, Shunde, Zhang, Xiuyue, Liu, Shaoying, Yue, Bisong (2010): Mitochondrial DNA genetic variation and phylogeography of the recently described vole species Proedromys liangshanensis Liu, Sun, Zeng and Zhao, 2007 (Rodentia: Arvicolinae). Journal of Natural History 44 (43-44): 2693-2703, DOI: 10.1080/00222933.2010.501911, URL: http://dx.doi.org/10.1080/00222933.2010.501911

Files

Restricted

The record is publicly accessible, but files are restricted to users with access.

Linked records

Additional details

Identifiers

LSID
urn:lsid:plazi.org:pub:D91BFF93DE04FFC4FFAB907FFF99FF84

Related works

Has part
Figure: 10.5281/zenodo.5212009 (DOI)
Figure: 10.5281/zenodo.5212013 (DOI)
Figure: 10.5281/zenodo.5212015 (DOI)
Figure: 10.5281/zenodo.5212019 (DOI)

References

  • Anderson FE. 2007. Population genetics of the carinate pillsnail, Euchemotrema hubrichti: genetic structure on a small spatial scale. Conserv Genet. 8:965-975.
  • Bohonak AJ. 1999. Dispersal, gene flow, and population structure. Q Rev Biol. 74:21-45.
  • Brown GG, Gadaleta G, Pepe G, Saccone C, Sbisa E. 1986. Structural conservation and variation in the D-loop-containing region of vertebrate mitochondrial DNA. J Mol Biol. 192:503-511.
  • Chen WC, Liu SY, Liu Y, Hao HH, Zeng B, Chen SD, Peng HY, Yue BS, Zhang XY. 2010. Phylogeography of the Large White-bellied Rat Niviventer excelsior suggests the influence of Pleistocene glaciations in the Hengduan Mountains. Zool Sci. 27:487-493
  • Clement M, Posada D, Crandall KA. 2000. TCS: a computer program to estimate gene genealogies. Mol Ecol. 9:1657-1660.
  • Excoffier L, Laval G, Schneider S. 2005. Arlequin Ver.3.0: an integrated software package for population genetics data analysis. Evol Bioinform Online. 1:47-50.
  • Felsenstein J. 1988. Phylogenies from molecular sequences: inference and reliability. Annu Rev Genet. 22:521-565.
  • Harrison TM, Copeland P, Kidd WSF, Yin A. 1992. Raising Tibet. Science 255:1663-1670.
  • Huelsenbeck JP, Ronquist F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755.
  • Irwin DE. 2002. Phylogeographic breaks without geographic barriers to gene flow. Evolution 56:2383-2394.
  • Kimura M. 1980. A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences. J Mol Evol. 16:111-120.
  • Lehmkuhl F, Haselein F. 2000. Quaternary palaeoenvironmental change on the Tibetan Plateau and adjacent areas (Western China and Western Mongolia). Quat Int. 65/66:121-145.
  • Liu SY, Sun ZY, Zeng ZY, Zhao EM. 2007. A new vole (Cricetidae: Arvicolinae: proedromys) from the Liangshan Mountains of Sichuan province, China. J Mammal. 88(5):1170-1178.
  • Liu XM, Wei FW, Li M, Jiang XL, Feng ZJ, Hu JC. 2004. Molecular phylogeny and taxonomy of wood mice (genus Apodemus Kaup, 1829) based on complete mtDNA cytochrome b sequences, with emphasis on Chinese species. Mol Phylogenet Evol. 33:1-15.
  • Luo J, Yang DM, Suzuki H, Wang YX, Chen W, Campbell KL, Zhang YP. 2004. Molecular phylogeny and biogeography of Oriental voles: genus Eothenomys (Muridae, Mammalia). Mol Phylogenet Evol. 33:349-362.
  • Meng LH, Yang R, Abbott RJ, Miehe G, Hu TH, Liu JQ. 2007. Mitochondrial and chloroplast phylogeography of Picea crassifolia Kom (Pinaceae) in the Qinghai-Tibetan Plateau and adjacent highlands. Mol Ecol. 16:4128-4137.
  • Paillard D. 1998. The timing of Pleistocene glaciations from a simple multiple-state climate model. Nature 391:378-381.
  • Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14(9):817-818.
  • Prentice HC, Lonn M, Lefkovitch LP, Runyeon H. 1995. Associations between alleles frequencies in Festuca ovina and habitat variation in the alvar grasslands on the Baltic island of Oland. J Ecol. 83:391-402.
  • Rogers AR, Harpending H. 1992. Population growth makes waves in the distribution of pairwise genetic differences. Mol Biol Evol. 9:552-569.
  • Rozas J, Sanchez-DelBarrio JC, Messeguer X, Rozas R. 2003. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19:2496-2497.
  • Saccone C, Attimonelli M, Sbisa E. 1987. Structural elements highly preserved during the evolution of the D-loop containing region in vertebrate mitochondrial DNA. J Mol Evol. 26:205-211.
  • Sambrook E, Fritsch F, Maniatis T. 1989. Molecular cloning: a laboratory manual. Cold Spring Harbour, NY: Cold Spring Harbour Laboratory Press.
  • Shi Y, Li J, Li B. 1998. Uplift and environmental changes of Qinghai-Xizang (Tibetan) Plateau in the Late Cenozoic. Guangdong, China: Guangdong Science and Technology Press, (in Chinese).
  • Su B, Fu YX, Wang YX, Jin L, Chakraborty R. 2001. Genetic Diversity and Population History of the Red Panda (Ailurus fulgens) as Inferred from Mitochondrial DNA Sequence Variations. Mol Biol Evol. 18:1070-1076.
  • Sun XL, Zheng D. 1998. Formation, evolution and development of Qinghai-Xizang (Tibetan) Plateau. Guangdong, China: Guangdong Science and Technology Press, (in Chinese).
  • Swofford DL. 2002. PAUP∗. Phylogenetic Analysis Using Parsimony (and other methods). Version 4.0b10∗. Sunderland, MA: Sinauer Associates.
  • Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595.
  • Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol. 24:1596-1599.
  • Templeton AR. 2004. Statistical phylogeography: methods of evaluating and minimizing inference errors. Mol Ecol. 13:789-809.
  • Templeton AR, Crandall KA, Sing CF. 1992. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics 132:619-633.
  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DJ. 1997. The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
  • Weir BS, Cockerham C. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38:1358-1370.
  • Xu LB, Zhou SZ, Cui JX, Wang J, David M. 2004. Dating of the Pleistocene glaciations around the Daocheng ice cap. J Glaciol Geocryol. 26(5):528-534.
  • Yang SJ, Yin ZH, Ma XM, Lei FM. 2006. Phylogeography of ground tit (Pseudopodoces humilis) based on mtDNA: evidence of past fragmentation on the Tibetan Plateau. Mol Phylogenet Evol. 41:257-265.
  • Yu N, Zheng CL, Zhang YP, Li WH. 2000. Molecular systematics of Pikas (genus Ochotona) inferred from mitochondrial DNA sequences. Mol Phylogenet Evol. 16:85-95.