Benchpress

# First make sure you are running a Linux OS (required by Apptainer) and that Apptained (Or Singularity >= 3.2) and Snakemake >= 8 are installed.
# (For Windows and macOS use, see https://benchpressdocs.readthedocs.io)

$ mkdir benchpress_2_13_0
$ tar -xf benchpress_2_13_0.tar.gz -C benchpress_2_13_0
$ cd benchpress_2_13_0

# To reproduce the small scale study of the paper, using all available cores, type

$ snakemake  --cores all  --use-singularity --configfile config/paper_er_sem_small.json

# If snakemake is installed in a conda environment called snakemake (as recommended by snakemake) you would have to load it first by 

$ conda activate snakemake