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Published August 16, 2021 | Version v2
Preprint Open

Benchpress paper version

Description

# First make sure you are running a Linux OS (required by Singularity) and that Singularity >= 3.5 and Snakemake >= 5.3.0 are installed.
 
$ mkdir benchpress_paper
$ tar -xf benchpress_paper.tar.gz -C benchpress_paper
$ cd benchpress_paper

# To reproduce Section 6.1 of the paper, using all available cores, type

$ snakemake  --cores all  --use-singularity --configfile config/sec6.1.json

# If snakemake is installed in a conda environment called snakemake (as recommended by snakemake) you would have to load it first by 

$ conda activate snakemake

 

Files

Files (83.1 MB)

Name Size Download all
md5:2e69660292e28588209e08b6bdad5302
75.1 MB Download
md5:e20b0756b7140483ce17ba663ea0e420
8.0 MB Download

Additional details

Related works

Is derived from
Software documentation: https://github.com/felixleopoldo/benchpress (URL)
Is supplemented by
Preprint: arXiv:2107.03863 (arXiv)