Published August 31, 2021 | Version v3
Dataset Open

Data release: Genomic evidence of contemporary hybridization between Schistosoma species

Creators

  • 1. Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom
  • 2. Department of Pathobiology and Population Sciences, Royal Veterinary College, University of London, Herts, AL9 7TA, United Kingdom
  • 3. Unité de Formation et de Recherche des Sciences Agronomiques, d'Aquaculture et de Technologies Alimentaires, Université Gaston Berger, Saint-Louis, Senegal
  • 4. The Natural History Museum, Department of Life Sciences, Cromwell Road, London SW7 5BD, United Kingdom

Description

This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see https://www.sanger.ac.uk/about/who-we-are/research-policies/open-access-science/

Please contact Duncan Berger (db22@sanger.ac.uk) with questions regarding pre-publication use of this dataset. 

SchCurr1.primary.fa - Schistosoma curassoni primary genome assembly 

SchCurr1.haplotypes.fa - Haplotype variants (unphased from SchCurr1.primary.fa)

SchCurr1.primary.fa.tbl - RepeatMasker2 output (run on the primary assembly).

allchrs.vcf.gz - All variants called on chromosomes 1-7+Z (Post quality control, with the exception that variants found within repetitive regions are included)

MITO.vcf.gz - All mitochondrial variants.  

SchCurr1.genomethreader.gff3 - Genomethreader based gene structure predictions (based on spliced alignments of S. mansoni (v9) transcript and protein sequences). 

Files

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