Published July 31, 2021 | Version v1.0.0
Dataset Open

Neuropixels single-mouse LFP data

  • 1. Carnegie Mellon University
  • 2. Allen Institute for Brain Science

Description

Single-mouse Neuropixels recordings (spikes and LFPs) in NWB format. Dataset used in the paper "Cross-population coupling of neural activity based on Gaussian process current source densities" by Klein, N., Siegle, J.H., Teichert, T., and Kass, R.E. (preprint: https://arxiv.org/abs/2104.10070). 

The data is part of the Allen Brain Observatory Neuropixels dataset (©2019 Allen Institute for Brain Science, available from https://portal.brain-map.org/explore/circuits/visual-coding-neuropixels). Six Neuropixels probes were simultaneously inserted through visual cortex, hippocampus, thalamus, and midbrain. On each probe, LFP data was recorded from up to 374 electrode locations in a checkerboard layout spanning two spatial dimensions: four columns spaced 16 microns apart, with 20 micron spacing between rows. LFP data was acquired at 2500 Hz after applying a 1000 Hz low-pass filter. Boundaries between regions were manually identified based on decreases in unit density as well as physiological signatures (such as elevated theta-band activity in the hippocampus). LFP electrodes without region labels were not included in the analysis. Spike trains and downsampled LFP data for this mouse (subject ID: 730760270; session ID: 755434585) can be accessed via the AllenSDK or via the DANDI Archive https://dandiarchive.org/dandiset/000021/draft. The original LFP data used for this analysis is available as part of the Allen Brain Observatory AWS Public Data Set https://registry.opendata.aws/allen-brain-observatory/.
 

Files

Files (4.3 GB)

Name Size Download all
md5:6e7b1e104aa3f533ce193525474fde83
2.5 GB Download
md5:ecdf362291b7da83c0161b9f75e7e5e7
1.8 GB Download