Published October 1, 2014
| Version v1
Journal article
Restricted
Overview of Xanthoparmelia taxa from South Korea including the description of two new species (Parmeliaceae, Ascomycota)
Description
Jayalal, Udeni, Divakar, Pradeep K., Joshi, Santosh, Oh, Soon Ok, Hur, Jae-Seoun (2014): Overview of Xanthoparmelia taxa from South Korea including the description of two new species (Parmeliaceae, Ascomycota). Phytotaxa 181 (2): 96-109, DOI: 10.11646/phytotaxa.181.2.3, URL: http://dx.doi.org/10.11646/phytotaxa.181.2.3
Files
Restricted
The record is publicly accessible, but files are restricted to users with access.
Linked records
Oops! Something went wrong while fetching results.
Additional details
Identifiers
- LSID
- urn:lsid:plazi.org:pub:4602FFED1348353DFF88DB1CFF9CFFF5
- URL
- http://publication.plazi.org/id/4602FFED1348353DFF88DB1CFF9CFFF5
References
- Ahti, T., Brodo, I.M. & Noble, W.J. (1987) Contributions to the lichen flora of British Columbia, Canada. Mycotaxon 28: 91-97.
- Ahti, T. & Hawksworth, D.L. (2005) Xanthoparmelia stenophylla, the correct name for X. somloensis, one of the most widespread usnic acid containing species of the genus. Lichenologist 37: 363-366. http://dx.doi.org/10.1017/s0024282905015197
- Akaike, H. (1974) A new look at the statistical model identification. IEEE Transactions on Automatic Control 19: 716-723. http://dx.doi.org/10.1109/TAC.1974.1100705
- Amo de Paz, G., Crespo, A., Elix, J.A. & Lumbsch, H.T. (2010a) Additional morphological diversity in Xanthoparmelia: Placoparmelia and Omphalodiella belong to this monophyletic clade. Bryologist 113: 376-386. http://dx.doi.org/10.1639/0007-2745-113.2.376
- Amo de Paz, G., Elix, J.A., Blanco, O., Lumbsch, H.T. & Crespo, A. (2010b) The genus Karoowia (Parmeliaceae, Ascomycota) includes unrelated clades nested within Xanthoparmelia. Australian Systematic Botany 23: 173-184.
- Aptroot, A. & Sipman, H.J.M. (2001) New Hong Kong lichens, ascomycetes and lichenicolous fungi. Journal of the Hattori Botanical Laboratory 91: 317-343.
- Blanco, O., Crespo, A. & Elix, J.A. (2005) Two new species of Xanthoparmelia (Ascomycota: Parmeliaceae) from Spain. Lichenologist 37: 97-100. http://dx.doi.org/10.1017/S0024282905014829
- Blanco, O., Crespo, A., Elix, J.A., Hawksworth, D.L. & Lumbsch, H.T. (2004) A molecular phylogeny and a new classification of parmelioid lichens containing Xanthoparmelia-type lichenan (Ascomycota: Lecanorales). Taxon 53: 959-975. http://dx.doi.org/10.2307/4135563
- Cho, S. & Lee, Y.N. (1980) Studies on Parmeliae in Mt. Deokyoo Area. Korean Journal of Mycology 8: 149-157.
- Crespo A., Blanko, O. & Hawksworth, D.L. (2001) The potential of mitochondrial DNA for establishing phylogeny and stabilizing generic concepts in the parmeloid lichens. Taxon 50: 807-819. http://dx.doi.org/10.2307/1223708
- Crespo, A., Divakar, P.K. & Hawksworth, D.L. (2011) Generic concepts in parmelioid lichens, and the phylogenetic value of characters used in their circumscription. Lichenologist 43: 511-535. http://dx.doi.org/10.1017/S0024282911000570
- Crespo, A., Kauff, F., Divakar, P.K., Prado, R.D., Perez-Ortega, S., Amo, G., Ferencova, Z., Blanco, O., Roca-Valiente, B., Nunez-Zapata, J., Cubas, P., Arguello, A., Elix, J.A., Esslinger, T.L., Hawksworth, D.L., Millanes, A., Molina M.C., Wedin, M., Ahti, T., Aptroot, A., Barreno, E., Bungartz, F., Calvelo, S., Candan, M., Cole, M., Ertz, D., Goffinet, B., Lindblom, L., Lucking, R., Lutzoni, F., Mattsson, J.E., Messuti, M.I., Miadlikowska, J., Piercey-Normore, M., Rico, V.J., Sipman, H.J.M., Schmitt, I., Spribille, T., Thell, A., Thor, G., Upreti, D.K. & Lumbsch, H.T. (2010) Phylogenetic generic classification of parmelioid lichens (Parmeliaceae, Ascomycota) based on molecular, morphological and chemical evidence. Taxon 59: 1735-1753.
- Divakar, P.K. & Upreti, D.K. (2005) Parmelioid lichens in India (A revisionary study). Bishen Singh Mahendra Pal Singh, India.
- Ekman, S. (1999) PCR optimization and troubleshooting, with special reference to the amplification of ribosomal DNA in lichenized fungi. Lichenologist 31: 517-531. http://dx.doi.org/10.1017/s0024282999000675
- Eliasaro, S. & Adler, M. (2002) Flavoparmelia and Xanthoparmelia (Parmeliaceae, lichenized Ascomycotina) of the Segundo Planalto of Parana (Brazil). Mitteilungen aus dem Institut fur Allgemeine Botanik in Hamburg 30-32: 25-34.
- Elix, J.A. (1994) Xanthoparmelia. Flora of Australia 55: 201-308.
- Elix, J.A. (1997) Further new species in the lichen family Parmeliaceae (Ascomycotina) from Australasia. Mycotaxon 65: 481-492.
- Elix, J.A. (1999) New species of Xanthoparmelia (lichenized Ascomycotina, Parmeliaceae) from South Africa. Mycotaxon 73: 51-61. http://dx.doi.org/10.1006/lich.2002.0383
- Elix, J.A. (2002) New species of Xanthoparmelia (lichenized Ascomycotina, Parmeliaceae) from Africa. Lichenologist 34: 283-291. http://dx.doi.org/10.1006/lich.2002.0383
- Elix, J.A. (2003a) New species and new records of Xanthoparmelia (lichenized Ascomycota, Parmeliaceae) from Western Australia. Lichenologist 35: 291-299. http://dx.doi.org/10.1016/s0024-2829(03)00040-9
- Elix, J.A. (2003b) The lichen genus Paraparmelia, a synonym of Xanthoparmelia (Ascomycota, Parmeliaceae). Mycotaxon 87: 395- 403.
- Elix, J.A. (2007) A new species of Xanthoparmelia (Parmeliaceae, lichenized Ascomycota) from Australia. Australasian Lichenology 61: 30-31.
- Elix, J.A., Johnston, J. & Armstrong, P.M. (1986) A revision of the lichen genus Xanthoparmelia in Australasia. Bulletin of the British Museum (Natural History, Botany) 15: 1-192.
- Elix, J.A. & Kantvilas, G. (2009) Further new species of Xanthoparmelia (Parmeliaceae, Ascomycota) from Tasmania. Bibliotheca Lichenologica 99: 123-132.
- Elix, J.A., Louwhoff, S.H.J.J. & Molina, M.C. (2000) Two new species of Xanthoparmelia (lichenized Ascomycotina, Parmeliaceae) from Australia containing norlobaridone. Mycotaxon 74: 499-503.
- Eriksson, O.E., Baral, H.O., Currah, R.S., Hansen, K., Kurtzman, C.P., Rambold, G. & Laessoe, T. (2004) Outline of Ascomycota-2004. Myconet 10: 1-99.
- Galloway, D.J. (2007) Xanthoparmelia. Flora of New Zealand: Lichens. Rev. 2nd ed. pp. 1896-1972.
- Gardes, M. & Bruns, T.D. (1993) ITS primers with enhanced specificity for basidiomycetes. Applications for the identification of mycorrhizae and rusts. Molecular Ecology 2: 113-118. http://dx.doi.org/10.1111/j.1365-294x.1993.tb00005.x
- Gutierrez, G., Blanco, O., Divakar, P.K., Lumbsch, H.T. & Crespo, A. (2007) Patterns of group I intron presence in nuclear SSU rDNA of the lichen family Parmeliaceae. Journal of Molecular Evolution 64: 181-195. http://dx.doi.org/10.1007/s00239-005-0313-y
- Hale, M.E. (1974) Bulbothrix, Parmelina, Relicina, and Xanthoparmelia, four new genera in the Parmeliaceae. Phytologia 28: 479-490.
- Hale M.E. (1987) Additions to the Xanthoparmelia Flora of Southern Africa (Lichenized Ascomycotina: Parmeliaceae). Mycotaxon 29: 251-266.
- Hale, M.E. (1988) New Combinations in the Lichen Genus Xanthoparmelia (Ascomycotina). Mycotaxon 33: 401-406.
- Hale, M.E. (1990)A Synopsis of the Lichen Genus Xanthoparmelia (Vainio) Hale (Ascomycotina, Parmeliaceae). Smithsonian Contribution to Botany 74: 1-241. http://dx.doi.org/10.5479/si.0081024x.74
- Harada, H., Okamoto, T. & Yoshimura, I. (2004) A checklist of lichens and lichen-allies of Japan. Lichenology 2: 124-125.
- Hawksworth, D.L. & Crespo, A. (2002) Proposal to conserve the name Xanthoparmelia against Chondropsis nom. Cons. (Parmeliaceae). Taxon 51:807. http://dx.doi.org/10.2307/1555046
- Huelsenbeck, J.P. & Ronquist, F. (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755. http://dx.doi.org/10.1093/bioinformatics/17.8.754
- Huneck, S., Ri, J.D., Ahti, T. & Poelt, J. (1989) Zur Kenntnis der Flechtenflora von Korea. Herzogia 8: 177-185.
- Hur, J.S., Koh, Y.J. & Harada, H. (2005) A checklist of Korean lichens. Lichenology 4: 91.
- Jeon, H.S., Koh, Y.J. Lokos, L., Lee, Y.M., Byun, B.K. & Hur, J.S. (2009) Report on the lichen list of North Korea. Korean Journal of Mycology 37: 1-10.
- Katoh, K. & Toh, H. (2008) Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinformatics 9: 286- 298. http://dx.doi.org/10.1093/bib/bbn013
- Ko, M.J. (1992) A taxonomic study of family Parmeliaceae and Physciaceae (lichens) in Mt. Chiri. Thesis. Sookmyung Women's University, Seoul, Korea.
- Krempelhuber, A. (1878) Lichenes, collecti in republica Argentina a Doctoribus Laentz et Hiemymus. Flora 61: 433-439.
- Kurokawa, S. (1989a) Studies on Japanese species of Xanthoparmelia (Parmeliaceae) (1). Journal of Japanese Botany 64: 165-175.
- Kurokawa, S. (1989b) Studies on Japanese species of Xanthoparmelia (Parmeliaceae) (2). Journal of Japanese Botany 64: 289-298.
- Kurokawa, S. (1989c) New or noteworthy species of Xanthoparmelia (Parmeliaceae). Annals of the Tsukuba Botanical Garden 6: 21-25.
- Kurokawa, S. (1991) Japanese species and genera of the Parmeliaceae. Journal of Japanese Botany 66: 152-159.
- Leavitt, S.D., Johnson, L. & St Clair, L.L. (2011) Species delimitation and evolution in morphologically and chemically diverse communities of the lichen-forming genus Xanthoparmelia (Parmeliaceae, Ascomycota) in western North America. American Journal of Botany 98: 175-188. http://dx.doi.org/10.3732/ajb.1000230
- Leavitt, S.D., Lumbsch, H.T.. Stenroos, S. & Clair, L.L. (2013) Pleistocene Speciation in North American Lichenized Fungi and the Impact of Alternative Species Circumscriptions and Rates of Molecular Evolution on Divergence Estimates. PLoS ONE 8(12): e85240. http://dx.doi.org/10.1371/journal.pone.0085240
- Lim, K.M., Yamamoto, Y. Harada, H., Lee, Y.M., Koh, Y.J. & Hur, J.S. (2006) New record of Karoowia saxeti (Stizenb.) Hale in South Korea. Mycobiology 34: 148-150. http://dx.doi.org/10.4489/MYCO.2006.34.3.148
- Lumbsch, H.T. & Huhndorf, S.M. (Ed.) (2007) Outline of Ascomycota - 2007. Myconet 13: 1-58.
- Moon, K.H. (1999) Lichens of Mt. Sorak in Korea. Journal of the Hattori Botanical Laboratory 86: 187-220.
- Nash III, T.H. & Elix, J.A. (2004) Xanthoparmelia. In: Nash III, T.H.; Ryan, B.D., Diederich, P., Gries, C., Bungartz, F. (Eds). Lichen flora of the greater Sonaran Desert region. Vol. II. Tempe, AZ, Lichens unlimited, Arizona State University. pp. 566-605.
- Nash III, T.H., Gries, C. & Elix, J.A. (1995) A Revision of the Lichen Genus Xanthoparmelia in South America. Bibliotheca Lichenologica 56: 1-157.
- Nash III, T.H. & Elix, J.A. (1987) New species and new reports in the Parmeliaceae (lichenized Ascomycotina) from South Africa and Australia. Mycotaxon 29: 467-476.
- Nylander, J.A.A., Wilgenbusch, J.C., Warren, D.L. & Swofford, D.L. (2007) AWTY (Are We There Yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics 24: 581-583. http://dx.doi.org/10.1093/bioinformatics/btm388
- Orange, A, James, P.W. & White, F.J. (2010) Microchemical methods for the identification of lichens. 2nd ed. London: British Lichen Society. pp. 1-101.
- Park, Y.S. (1990) The macrolichen flora of South Korea. Bryologist 93: 130-131. http://dx.doi.org/10.2307/3243619
- Posada, D. (2008) JModelTest: phylogenetic model averaging. Molecular Biology and Evolution 25: 1253-1256. http://dx.doi.org/10.1093/molbev/msn083
- Rambaut, A. (2009) FigTree 1.2.2 [computer program]. Website http:// tree.bio.ed.ac.uk/software/figtree/.
- Schoch, C.L., Seifert, K.A., Huhndorf, S., Robert, V., Spouge, J.L., Levesque, C.A., Chen, W. & Fungal Barcoding Consortium (2012) ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences 109: 6241-6246. http://dx.doi.org/10.1073/pnas.1117018109
- Sharma, L.R. & Kurokawa, S. (1990) Species of Xanthoparmelia in Nepal. Journal of Japanese Botany 65: 58-60.
- Stamatakis, A. (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690. http://dx.doi.org/10.1093/bioinformatics/btl446
- Stamatakis, A., Hoover, P. & Rougemont, J. (2008) A rapid bootstrap algorithm for the RAxML Web Servers. Systematic Biology 57: 758-771. http://dx.doi.org/10.1080/10635150802429642
- Talavera, G. & Castresana, J. (2007) Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Systematic Biology 56: 564-577. http://dx.doi.org/10.1080/10635150701472164
- Thell, A., Feuerer, T., Elix, J.A. & Karnefelt, I. (2006) A contribution to the phylogeny and taxonomy of Xanthoparmelia (Ascomycota,P armeliaceae). Journal of the Hattori Botanical Laboratory 100: 797-807.
- Wang, X.Y., Koh, Y.J. & Hur, J.S. (2008) Taxonomic study on the lichen genus Xanthoparmelia (Ascomycotina, Parmeliaceae) in Korea. Mycobiology 36: 203-210. http://dx.doi.org/10.4489/MYCO.2008.36.4.203
- Wei, J.C. (1991) An enumeration of lichens in China. International Academic Publishers, Beijing.
- White, T.J., Bruns, T.D., Lee, S. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal DNA genes for phylogetics. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J. (Eds.) PCR Protocols: a Guide to Methods and Applications. Academic Press, San Diego, USA, pp. 315-321. http://dx.doi.org/10.1016/B978-0-12-372180-8.50042-1
- Wolseley, P.A., Aguirre-Hudson, B. & McCarthy, P.M. (2002) Catalogue of the lichens of Thailand. Bulletin of the Natural History Museum, London (Botany) 32: 13-59. http://dx.doi.org/10.1017/s0968044602000038
- Yoshimura, I., Kinoshita, Y., Yamamoto, Y., Huneck, S. & Yamada, Y. (1994) Analysis of secondary metabolites from lichen by high performance liquid chromatography with a photodiode array detector. Phytochemical Analysis 5: 197-205. http://dx.doi.org/10.1002/pca.2800050405