peterjc/thapbi-pict: THAPBI PICT v0.10.0

Released on PyPI on 2021-07-28:

https://pypi.org/project/thapbi-pict/0.10.0/

This update changes the database schema in a backward compatibility breaking way in order to support multiple primer amplicons, which will be separated based on the primers when calling cutadapt.

It also reworks the distance based classifiers to reduce their memory usage, taking advantage of the changes in v0.9.9 to make a non-redundant FASTA file so that the classifier does not have to repeatedly re-classify the same sequences. This makes it possible to use larger databases.

This has required adding -k / --marker to some of the commands. There were therefore additional minor changes to the command line options including renaming -k / --spike to -y / --synthetic, dropping -k as a shorthand for --known. Also the -o / -output and -r / --report arguments were combined into a single output folder or stem setting.