althonos/pyhmmer: 0.4.5

Published July 19, 2021 | Version v0.4.5

Software Open

Added

OptimizedProfile.convert method to configure an optimized profile from a Profile without reallocating a new P7_OPROFILE struct.

Changed

Rewrite the plan7.Pipeline search loop to avoid reacquiring the GIL between reference sequences.
Require the reference sequences to be stored in a collection (instead of an iterable) when passing them to the search_hmm, search_msa and search_seq methods of plan7.Pipeline.
Avoid reallocating a new OptimizedProfile every time a new HMM is passed to Pipeline.search_hmm.
Relax the GIL while sorting and thresholding TopHits in Pipeline search methods.

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althonos/pyhmmer-v0.4.5.zip md5:6da33dea223eac09a3d734d426d9c4e0	7.2 MB	Preview Download

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