Published July 12, 2021
| Version v1.0
Software
Open
Independent Markov Decomposition
Authors/Creators
- 1. Freie Universität Berlin
- 2. University of Amsterdam
- 3. UCSD
Description
Independent Markov decomposition
This repository contains python code implementing independent Markov decomposition (IMD) for MD data and discrete test systems. The Jupyter notebooks reproduce numerical simulations and visualizations of
Tim Hempel, Mauricio J. del Razo, Christopher T. Lee, Bryn C. Taylor, Rommie E. Amaro, and Frank Noé:
*Independent Markov Decomposition: Towards modeling kinetics of biomolecular complexes*,
https://www.biorxiv.org/content/10.1101/2021.03.24.436806v1
Please find the latest version directly in our GitHub repository.
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markovmodel/decomposed_msms-v1.0.zip
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(420.9 kB)
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Additional details
Related works
- Is supplement to
- https://github.com/markovmodel/decomposed_msms/tree/v1.0 (URL)