Mesenchymal niche in myelodysplastic hematopoiesis at single cell resolution
Creators
Description
These two files contain the compiled and merged 10x single cell datasets from the two dataset present in the publication.
sessionInfo()
R version 3.6.3 (2020-02-29) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 18363)
Matrix products: default
locale: [1] LC_COLLATE=German_Germany.1252 LC_CTYPE=German_Germany.1252 [3] LC_MONETARY=German_Germany.1252 LC_NUMERIC=C [5] LC_TIME=German_Germany.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] future_1.14.0 pheatmap_1.0.12 ggplot2_3.3.2 cowplot_1.0.0 [5] reticulate_1.12 Seurat_3.0.2 dplyr_1.0.2
loaded via a namespace (and not attached):
[1] tsne_0.1-3 nlme_3.1-144 bitops_1.0-6 [4] fs_1.3.1 usethis_1.5.1 devtools_2.1.0 [7] httr_1.4.2 RColorBrewer_1.1-2 rprojroot_1.3-2 [10] sctransform_0.2.0 tools_3.6.3 backports_1.1.4 [13] R6_2.4.0 irlba_2.3.3 KernSmooth_2.23-16 [16] lazyeval_0.2.2 colorspace_1.4-1 npsurv_0.4-0 [19] withr_2.1.2 gridExtra_2.3 tidyselect_1.1.0 [22] prettyunits_1.0.2 processx_3.4.1 compiler_3.6.3 [25] cli_1.1.0 plotly_4.9.0 desc_1.2.0 [28] labeling_0.3 caTools_1.17.1.2 scales_1.0.0 [31] lmtest_0.9-37 ggridges_0.5.1 callr_3.3.1 [34] pbapply_1.4-1 stringr_1.4.0 digest_0.6.20 [37] R.utils_2.9.0 pkgconfig_2.0.2 htmltools_0.3.6 [40] bibtex_0.4.2 sessioninfo_1.1.1 htmlwidgets_1.3 [43] rlang_0.4.7 rstudioapi_0.10 generics_0.0.2 [46] jsonlite_1.6 zoo_1.8-6 ica_1.0-2 [49] gtools_3.8.1 R.oo_1.22.0 magrittr_1.5 [52] Matrix_1.2-17 Rcpp_1.0.1 munsell_0.5.0 [55] ape_5.3 lifecycle_0.2.0 R.methodsS3_1.7.1 [58] stringi_1.4.3 gbRd_0.4-11 MASS_7.3-51.5 [61] pkgbuild_1.0.3 gplots_3.0.1.1 Rtsne_0.15 [64] plyr_1.8.4 grid_3.6.3 parallel_3.6.3 [67] gdata_2.18.0 listenv_0.7.0 ggrepel_0.8.1 [70] crayon_1.3.4 lattice_0.20-38 splines_3.6.3 [73] SDMTools_1.1-221.1 ps_1.3.0 pillar_1.4.6 [76] igraph_1.2.4.1 reshape2_1.4.3 future.apply_1.3.0 [79] codetools_0.2-16 pkgload_1.0.2 glue_1.4.2 [82] lsei_1.2-0 metap_1.1 data.table_1.12.2 [85] remotes_2.1.0 png_0.1-7 vctrs_0.3.4 [88] Rdpack_0.11-0 testthat_2.1.1 tidyr_1.1.2 [91] gtable_0.3.0 RANN_2.6.1 purrr_0.3.4 [94] assertthat_0.2.1 xfun_0.8 rsvd_1.0.1 [97] viridisLite_0.3.0 survival_3.1-8 tibble_3.0.3 [100] tinytex_0.21 memoise_1.1.0 cluster_2.1.0 [103] globals_0.12.4 fitdistrplus_1.0-14 ellipsis_0.3.1 [106] ROCR_1.0-7
Files
Restricted
The record is publicly accessible, but files are restricted to users with access.
Request access
If you would like to request access to these files, please fill out the form below.
You need to satisfy these conditions in order for this request to be accepted:
Until the paper is accepted for publication, this dataset will be under restricted access and only avaiable to reviewers.
You are currently not logged in. Do you have an account? Log in here