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Published May 6, 2014 | Version v1
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The phylogenetic position of the Critically Endangered Saint Croix ground lizard Ameiva polops: revisiting molecular systematics of West Indian Ameiva

Authors/Creators

  • 1. Department of Wildlife and Fisheries Sciences, Texas A&M University, College Station, TX 77843-2258, USA.
  • 2. Department of Biological Sciences, Sam Houston State University, Huntsville, TX 77340, USA.

Description

Hurtado, Luis A., Santamaria, Carlos A., Fitzgerald, Lee A. (2014): The phylogenetic position of the Critically Endangered Saint Croix ground lizard Ameiva polops: revisiting molecular systematics of West Indian Ameiva. Zootaxa 3794 (2): 254-262, DOI: 10.11646/zootaxa.3794.2.4

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Cites
Publication: 10.5479/si.03629236.177.i (DOI)
Publication: 10.1006/mpev.1998.0500 (DOI)
Publication: 10.1016/j.ympev.2004.04.003 (DOI)
Publication: 10.1016/j.ympev.2007.05.017 (DOI)
Publication: 10.5479/si.00775630.251.1 (DOI)
Publication: 10.2307/2406605 (DOI)
Publication: 10.1093/bioinformatics/17.8.754 (DOI)
Publication: 10.1007/s10592-012-0316-3 (DOI)
Publication: 10.1080/01621459.1995.10476572 (DOI)
Publication: 10.1093/nar/gkq443 (DOI)
Publication: 10.1111/j.1096-3642.1983.tb00529.x (DOI)
Publication: 10.1206/0003-0082(2002)365<0001:prowlo>2.0.co;2 (DOI)
Publication: 10.1093/bioinformatics/btg180 (DOI)
Publication: 10.1109/ipdps.2006.1639535 (DOI)
Publication: 10.1093/bioinformatics/btl446 (DOI)
Publication: 10.1093/oxfordjournals.molbev.a003872 (DOI)
Publication: 10.1093/bioinformatics/btq228 (DOI)
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Dataset: http://table.plazi.org/id/B0F51D96FFBBFFE9FF10FCC6FDBBA60C (URL)
Figure: 10.5281/zenodo.4914920 (DOI)
Figure: 10.5281/zenodo.4914922 (DOI)

References

  • Adachi, J. & Hasegawa, M. (1996) MOLPHY version 2.3: programs for molecular phylogenetics based on maximum likelihood. Computer Science Monographs of Institute of Statistical Mathematics, 28, 1-150.
  • Barbour, T. & Noble, G.K. (1915) A revision of the lizards of the genus Ameiva. Bulletin of the Museum of Comparative Zoology, 59, 417-479.
  • Baskin, J.N. & Williams, E.E. (1966) The Lesser Antillean Ameiva (Sauria, Teiidae). Studies on the Fauna of Curacao and other Caribbean islands, 89, 144-176.
  • Butterlin, J. (1956) La Constitution Geologique et la Structure des Antilles. Centre National de la Recherche Scientifique, Paris, 456 pp.
  • Cochran, D. (1941) The herpetology of Hispaniola. Bulletin of the United States National Museum, 177, 1-398. http://dx.doi.org/10.5479/si.03629236.177.i
  • Crother, B.I. & Guyer, C. (1996) Caribbean historical biogeography: was the dispersal-vicariance debate eliminated by an extraterrestrial bolide? Herpetologica, 52, 440-465.
  • Dodd, C.K.J. (1980) Ameiva polops (Cope). St. Croix ground lizard. Catalogue of American Amphibians and Reptiles, 240, 1-2.
  • Feller, A.E. & Hedges, S.B. (1998) Molecular evidence for the early history of living amphibians. Molecular Phylogenetics and Evolution, 9, 509-516. http://dx.doi.org/10.1006/mpev.1998.0500
  • Gifford, M.E., Powell, R., Larson, A. & Gutberlet, R.L.J. (2004) Population structure and history of a phenotypically variable teiid lizard (Ameiva chrysolaema) from Hispaniola: the influence of a geologically complex island. Molecular Phylogenetics and Evolution, 32, 735-748. http://dx.doi.org/10.1016/j.ympev.2004.04.003
  • Giugliano, L.G., Collevatti, R.G. & Colli, G.R. (2007) Molecular dating and phylogenetic relationships among Teiidae (Squamata) inferred by molecular and morphological data. Molecular Phylogenetics and Evolution, 45, 168-179. http://dx.doi.org/10.1016/j.ympev.2007.05.017
  • Harvey, M.B., Ugueto, G.N. & Gutberlet, R.L. (2012) Review of teiid morphology with a revised taxonomy and phylogeny of the Teiidae (Lepidosauria: Squamata). Zootaxa, 3459, 1-156.
  • Heatwole, H., Levins, R. & Byer, M.D. (1981) Biogeography of the Puerto Rican Bank. Atoll Research Bulletin, 251, 1-69. http://dx.doi.org/10.5479/si.00775630.251.1
  • Heatwole, H. & MacKenzie, F. (1967) Herpetogeography of Puerto Rico. IV. Paleogeography, faunal similarity and endemism. Evolution, 21, 429-438. http://dx.doi.org/10.2307/2406605
  • Hedges, S.B. (1994) Molecular evidence for the origin of birds. Proceedings of the National Academy of Sciences of the United States of America, 91, 2621-2624.
  • Hedges, S.B. (2001) Biogeography of the West Indies: an overview. In: Woods, C.A. & Sergile, F.E. (Eds.), Biogeography of the West Indies: Patterns and Perspectives. CRC Press, London, pp. 15-33.
  • Hedges, S.B., Bezy, R.L. & Maxson, L.R. (1991) Phylogenetic relationships and biogeography of xantusiid lizards, inferred from mitochondrial DNA sequences. Molecular Biology and Evolution, 8, 767-780.
  • Hower, L.M. & Hedges, S.B. (2003) Molecular phylogeny and biogeography of West Indian teiid lizards genus Ameiva. Caribbean Journal of Science, 39, 298-306.
  • Huelsenbeck, J.P. & Ronquist, F. (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754-755. http://dx.doi.org/10.1093/bioinformatics/17.8.754
  • Hurtado, L.A., Santamaria, C.A. & Fitzgerald, L. (2012) Conservation genetics of the Critically Endangered Saint Croix ground lizard (Ameiva polops Cope 1863). Conservation Genetics, 13, 665-679. http://dx.doi.org/10.1007/s10592-012-0316-3
  • Iturralde-Vinent, M.A. & MacPhee, R.D.E. (1999) Paleogeography of the Caribbean Region: implications for Cenozoic biogeography. Bulletin of the American Museum of Natural History, 238, 1-95.
  • Kass, R.E. & Raftery, A.E. (1995) Bayes Factors. Journal of the American Statistical Association, 90, 773-795. http://dx.doi.org/10.1080/01621459.1995.10476572
  • McNair, D.B. & Coles, W. (2003) Response of the St. Croix ground lizard Ameiva polops to severe local disturbance of critical habitat at Protestant Cay: before-and-after comparison. Caribbean Journal of Science, 39, 392-398.
  • McNair, D.B. & Lombard, C.D. (2004) Population estimates, habitat associations, and management of Ameiva polops (Cope) at Green Cay, United States Virgin Islands. Caribbean Journal of Science, 40, 353-361.
  • McNair, D.B. & Mackay, A. (2005) Population estimates and management of Ameiva polops (Cope) at Ruth Island, United States Virgin Islands. Caribbean Journal of Science, 41, 352-357.
  • Nellis, D. (1996) Ameiva polops. In: IUCN 2013. IUCN Red List of Threatened Species. Version 2013.2. Available from: www.iucnredlist.org (accessed 8 March 2014)
  • Newton, M.A. & Raftery, A.E. (1994) Approximate Bayesian inference with the weighted likelihood bootstrap. Journal of the Royal Statistical Society. Series B (Methodological), 56, 3-48.
  • Pagel, M. & Meade, A. (2004) A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data. Systematic Biology, 53, 571-581.
  • Penn, O., Privman, E., Ashkenazy, H., Landan, G., Graur, D. & Pupko, T. (2010) GUIDANCE: a web server for assessing alignment confidence scores. Nucleic Acids Research, 38 (Web Server issue), W23-W28. http://dx.doi.org/10.1093/nar/gkq443
  • Philibosian, R. & Ruibal, R. (1971) Conservation of the lizard Ameiva polops in the Virgin Islands. Herpetologica, 27, 450-454.
  • Presch, W.F. (1974) Evolutionary relationships and biogeography of the macroteiid lizards (family Teiidae, subfamily Teiinae). Bulletin of the Southern California Academy of Sciences, 73, 23-32.
  • Presch, W.F. (1983) The lizard family Teiidae: is it a monophyletic group? Zoological Journal of the Linnean Society, 77, 189-197. http://dx.doi.org/10.1111/j.1096-3642.1983.tb00529.x
  • Rambaut, A. & Drummond, A.J. (2009) Tracer v1.5. Available from: http://beast.bio.ed.ac.uk/Tracer (accessed 14 April 2014)
  • Reeder, T.W., Cole, C.J. & Dessauer, H.C. (2002) Phylogenetic relationships of whiptail lizards of the genus Cnemidophorus (Squamata: Teiidae): a test of monophyly, reevaluation of karyotypic evolution, and review of hybrid origins. American Museum Novitates, 1-61. http://dx.doi.org/10.1206/0003-0082(2002)365<0001:prowlo>2.0.co;2
  • Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572-1574. http://dx.doi.org/10.1093/bioinformatics/btg180
  • Schwartz, A. & Henderson, R.W. (1991) Amphibians and Reptiles of the West Indies: Descriptions, Distributions, and Natural History. University of Florida Press, Gainesville, FL, 714 pp.
  • Stamatakis, A. (2006a) Phylogenetic models of rate heterogeneity: a high performance computing perspective, In: Proceedings of 20th IEEE/ACM International Parallel and Distributed Processing Symposium, 25-29 April 2006, Thodes Isand, Greece, pp. 278-278. http://dx.doi.org/10.1109/ipdps.2006.1639535
  • Stamatakis, A. (2006b) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics, 22, 2688-2690. http://dx.doi.org/10.1093/bioinformatics/btl446
  • Stamatakis, A., Hoover, P. & Rougemont, J. (2008) A rapid bootstrap algorithm for the RAxML web servers. Systematic Biology, 57, 758-771.
  • Suchard, M.A., Weiss, R.E. & Sinsheimer, J.S. (2001) Bayesian selection of continuous-time Markov chain evolutionary models. Molecular Biology and Evolution, 18, 1001-1013. http://dx.doi.org/10.1093/oxfordjournals.molbev.a003872
  • Sukumaran, J. & Holder, M.T. (2010) DendroPy: a Python library for phylogenetic computing. Bioinformatics, 26, 1569-1571. http://dx.doi.org/10.1093/bioinformatics/btq228
  • Tao, N., Bruno, W.J., Abfalterer, W., Moret, B.M.E., Leitner, T. & Kuiken, C. (2005) FINDMODEL: a tool to select the best-fit model of nucleotide substitution. Vol. 2011. http://hcv.lanl.gov/content/sequence/findmodel/findmodel.html (accessed 14 April 2014)
  • Treglia, M.L. (2010) A translocated population of the St. Croix ground lizard: analyzing its detection probability and investigating its impacts on the local prey base. Department of Wildlife and Fisheries Sciences, Texas A&M University, College Station, TX, 57 pp.
  • Treglia, M.L. & Fitzgerald, L.A. (2011) Translocation of the St. Croix ground lizard to Buck Island Reef National Monument, St. Croix, U.S. Virgin Islands. In: Soorae, P.S. (Ed.), Global Re-introduction Perspectives: 2011. More case studies from around the globe. IUCN/SSC Re-introduction Specialist Group and Abu Dhabi, UAE: Environment Agency-Abu Dhabi, Gland, Switzerland, pp. 109-115.