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A review of the systematics and taxonomy of Pythonidae: an ancient serpent lineage
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Barker, David G., Barker, Tracy M., Davis, Mark A., Schuett, Gordon W. (2015): A review of the systematics and taxonomy of Pythonidae: an ancient serpent lineage. Zoological Journal of the Linnean Society 175 (1): 1-19, DOI: 10.1111/zoj.12267, URL: http://dx.doi.org/10.1111/zoj.12267
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References
- Anderson FE, Swofford DL. 2004. Should we be worried about long-branch attraction in real data sets? Investigations using metazoan 18s rDNA. Molecular Phylogenetics and Evolution 33: 440-451.
- Barbour T. 1912. A contribution to the zoogeography of the East Indian Islands. Memoirs of the Museum of Comparative Zoology XLIV: 1-203. + 8 plates.
- Barker DG, Barker TM. 1994. Maintenance and reproduction of a little-known python: Savu python, Liasis mackloti savuensis. The Vivarium 5: 18-21.
- Barker DG, Barker TM. 2003. Family: pythons (Pythonidae). In: Hutchins M, Murphy JB, Schlager N, eds. Grzimek's animal life encyclopedia, 2nd edn: Vol. 7, reptiles. Farmington: Gale Group, 419-428.
- Bergsten J. 2005. A review of long-branch attraction. Cladistics 21: 163-193.
- Boulenger GA. 1893. Catalog of the snakes in the British museum, volume 1, containing the families typhlopidae, glauconiidae, Boidae, ilysiidae, uropeltidae, Xenopeltidae, and colubridae aglyphae, part. London: British Museum (Natural History), Taylor and Francis, 382 + 20 Plates.
- Brongersma LD. 1953. Zoology Notes on New Guinean Reptiles andAmphibians II. Proc.Koninklijke Nederlandse Akademie van Wetenschappen, Amsterdam (Series C) 56: 317-325.
- Brongersma LD. 1956. On two species of boid snakes from the Lesser Sunda Islands. Proc. Koninklijke Nederlandse Akademie van Wetenschappen, Amsterdam (Series C) 59: 290- 300.
- Broughton RE, Stanley SE, Durrett RT. 2000. Quantification of homoplasy for nucleotide transitions and transversions and a reexamination of assumptions in weighted phylogenetic analysis. Systematic Biology 49: 617-627.
- Carmichael CK. 2007. Phylogeography of the Indonesian water python, Liasis mackloti ssp. (Squamata: Boidae: Pythoninae) of Indonesia's Lesser Sundas Archipelago: a comparative approach toward resolving phylogeny. Unpublished D. Phil. Thesis, University of Southern Mississippi.
- Carmichael CK, Kreiser BR, Barker DG, Barker TJ, Gillingham JC. 2002. Geographic variation in pheromone trailing behaviors of the Indonesian water python (Liasis mackloti) of Indonesia's Lesser Sunda Archipelago. In: Henderson RW, Powell R, eds. Biology of the boas and pythons. Eagle Mountain: UtahL Eagle Mountain Publishing L.C, 227- 240.
- Carstens BC, Knowles LL. 2007. Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: an example from Melanoplus grasshoppers. Systematic Biology 56: 400-411.
- Cogger HG, Cameron EE, Cogger HM. 1983. Zoological catalogue of Australia. Vol. 1. Amphibians and reptiles. Canberra: Australian Government Publishing Service.
- Daudin FM. 1803. Histoire naturelle, generale et particuliere des reptiles. Societes D'Histoire Naturelle Et Philomatique de Paris. De Imprimateur de F. Dufart (2)3: 187-188.
- De Lang R. 2011. The snakes of the Lesser Sunda Islands, Nusa Tengara, Indonesia: a field guide to the terrestrial and semi-aquatic snakes with idenfication key. Chimaira, Frankfurt am Main, Germany.
- Degnan JH, Rosenberg NA. 2006. Discordance of species trees with their most likely gene trees. PLoS Genetics 2: 762- 768.
- Fitzinger LJ. 1843. Systema reptilium. Vienna: Fasciculus Primus.
- Frost DR, Hillis DM. 1990. Species in concept and practice: herpetological applications. Herpetologica 46: 87-104.
- Gow G. 1977. A new species of python from Arnhem Land. Australian Zoologist 19: 133-139.
- Gray JE. 1842. Synopsis of the species of prehensile-tailed snakes, or family Boidae. In: Gray J, ed. Zoological miscellany. London: Truettel, Wurtz & Co, 41-46.
- Gray JE. 1849. Catalog of the specimens of snakes in the collection of the British Museum. London: Edward Newman.
- Grazziotin FG, Zaher H, Ferrarezzi H, Klaczko J, Bonatto SL, Wilkinson M. 2007. Higher-level molecular phylogeny of snakes: conflicts and congruence. Darwiniana 45: 17-19.
- Harvey MB, Barker DG, Ammerman LK, Chippindale PT. 2000. Systematics of pythons of the Morelia amethistina complex (Serpentes: Boidae) with the description of three new species. Herpetological Monographs No. 14.
- Heled J, Drummond AJ. 2009. Bayesian inference of species trees from multilocus data. Molecular Biology and Evolution 27: 570-580.
- Henderson RW, Powell R. 2007. Natural history of West Indian reptiles and amphibians. Gainesville: University Press of Florida.
- Hennig W. 1966. Phylogenetic systematics. Urbana: Univ. Illinois Press.
- Hey J, Waples RS, Arnold ML, Butlin RK, Harrison RG. 2003. Understanding and confronting species uncertainty in biology and conservation. Trends in Ecology and Evolution 18: 597-603.
- Hoelzer GA, Melnick DJ. 1994. Patterns of speciation and limits to phylogenetic resolution. Trends in Ecology and Evolution 9: 104-107.
- Huang H, Knowles LL. 2009. What is the danger of the anomaly zone for empirical phylogenetics? Systematic Biology 58: 527-536.
- Hubrecht A. 1879. Notes III. On a new genus and species of Pythonidae from Salawatti. Notes from the Leyden Museum 1: 14-15.
- Isaac NJB, Mallet J, Mace GM. 2004. Taxonomic inflation: its influence on macroecology and conservation. Trends in Ecology and Evolution 19: 464-469.
- Kallersjo M, Albert VA, Farris JS. 1999. Homoplasy increases phylogenetic structure. Cladistics 15: 91-93.
- Kluge AG. 1991. Boine phylogeny and research cycles. Miscellaneous Publications, Museum of Zoology, University of Michigan 178: 1-58.
- Kluge AG. 1993. Aspidites and the phylogeny of pythonine snakes. Records of the Australian Museum (Supplement) 19: 1-77.
- Kluge AG. 1998. Total evidence or taxonomic congruence: cladistics or consensus classification. Cladistics 14: 151- 158.
- Knowles LL, Carstens BC. 2007. Delimiting species without monophyletic gene trees. Systematic Biology 56: 887-895.
- Kubatko LS, Degnan J. 2007. Inconsistency of phylogenetic estimates from concatenated data under coalescence. Systematic Biology 56: 17-24.
- Lawson R, Slowinski JB, Burbrink FT. 2004. A molecular approach to discerning the phylogenetic placement of the enigmatic snake Xenophidion schaeferi among the Alethinophidia. Journal of Zoology, London 263: 285-294.
- Linnaeus C. 1758. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis. Vol. 1. 10th edn. Holmaie: Laurentii.
- Liu L, Edwards SV. 2009. Phylogenetic analysis in the anomaly zone. Systematic Biology 58: 452-460.
- Maddison WP, Knowles LL. 2006. Inferring phylogeny despite incomplete lineage sorting. Systematic Biology 55: 21-30.
- Marx H, Raab GB. 1970. Character analysis: an empirical approach applied to advanced snakes. Journal of Zoology 161: 528-548.
- McDiarmid RW, Campbell JA, Toure T'S. 1999. Snake species of the world. A taxonomic and geographic reference. Volume 1. Washington, DC: Herpetologists League.
- McDowell SB. 1975. A catalogue of the snakes of New Guinea and the Solomons, with special reference to those in the Bernice P. Bishop Museum, Part 2. Anilioidea and Pythoninae. Journal of Herpetology 9: 1-79.
- Meyer AB. 1874. Eine Mitteilung von Hrn. Dr, Adolf Bernhard Meyer uber die von ihm auf Neu-Guinea den Inseln Jobi, Mysore und Mafoor im Jahr 1873 gesammelten Amphibien. Monatsberichte Koeniglich Preussiche Akademie der Wissenschaften zu Berlin 1872: 128-140.
- Noonan BP, Chippindale PT. 2006. Dispersal and vicariance: the complex evolutionary history of boid snakes. Molecular Phylogenetics and Evolution 40: 347-358.
- O'hUigin C, Satta Y, Takahata N, Klein J. 2002. Contribution of homoplasy and of ancestral polymorphism to the evolution of genes in anthropoid primates. Molecular Biology and Evolution 19: 1501-1513.
- Obst FJ. 1977. Die herpetologische Sammlung des Staatlichen Museums fur Tierkunde Dresden und ihre Typusexemplare. Zoologische Abhandlungen / Staatliches Museum fur Tierkunde in Dresden 34: 171-186.
- Parker F. 1982. The snakes of the western province. Konebodu: Division of Wildlife.
- Peters W. 1876. Uber die von S. M. S. Gazelle mitgebrachten Amphibien. Konigliche Akademie der Wissenschaften in Berlin 1876: 528-535.
- Pollock DD, Zwickl DJ, McGuire JA, Hillis DM. 2002. Increased taxon sampling is advantageous for phylogenetic inference. Systematic Biology 51: 664-671.
- Pyron RA, Burbrink FT, Wiens JJ. 2013. A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes. BMC Evolutionary Biology 13: 93. online at: doi:10.1186/1471-2148-13-93.
- Rawlings LH, Barker DG, Donnellan SC. 2004. Phylogenetic relationships of the Australo-Papuan Liasis pythons (Reptilia: Macrostomata), based on mitochondrial DNA. Australian Journal of Zoology 52: 215-227.
- Rawlings LH, Donnellan SC. 2003. Phylogeographic analysis of the green python, Morelia viridis, reveals cryptic diversity. Molecular Phylogenetics and Evolution 27: 36- 44.
- Rawlings LH, Rabosky DN, Donnellan SC, Hutchinson MN. 2008. Python phylogenetics: inference from morphology and mitochondrial DNA. Biological Journal of the Linnean Society 93: 603-619.
- Reynolds RG, Niemiller ML, Revell LJ. 2014. Toward a treeof-life for the boas and pythons: multilocus species-level phylogeny with unprecedented taxon sampling. Molecular Phylogenetics and Evolution 71: 201-213.
- Rosenberg NA, Tao R. 2008. Discordance of species trees with their most likely gene trees: the case of five taxa. Systematic Biology 57: 131-140.
- Scanlon JD, Mackness BS. 2002. A new giant python from the Pliocene Bluff Downs Local Fauna of northeastern Queensland. Alcheringa 25: 425-437.
- Schlegel H. 1837. Essai sur la physionomie des serpens. Amsterdam: M.H. Schonekat.
- Schleip WD. 2008. Revision of the Genus Leiopython Hubrecht, 1879 (Serpentes: Pythonidae) with the re-description of taxa recently described by Hoser (2000) and the description of new species. Journal of Herpetology 42: 645-667.
- Schleip WD. 2014. Two new species of Leiopython Hubecht, 1879 (Pythonidae: Serpentes): non-compliance with the international code of zoological nomenclature leads to unavailable names in zoological nomenclature. Journal of Herpetology 48: 272-275.
- Schleip WD, O'Shea M. 2010. Annotated checklist of the recent and extinct pythons (Serpentes, Pythonidae), with notes on nomenclature, taxonomy, and distribution. ZooKeys 66: 29- 79.
- Schneider JG. 1801. Historiae amphibiorum naturalis et liturariae. Fasciculus secundus, continens crocodilos, scincos, chamaesauras, boas, pseudoboas, elapes, angues, amphisbaenas, et caecilias. Jena (Fried, Frommann).
- Schuz E. 1929. Verzeichnis der Typen des Staatlichen Museums fur Tierkunde Dresden. 1. Teil Fische, Amphibien, Reptilien. Abhandlungen and Berichte des koniglichen zoologischen and anthropologisch - ethnographischen Museums zu Dresden 34: 171-186.
- Siddall ME. 1998. Success of parsimony in the four-taxon case: long-branch repulsion by likelihood in the Farris Zone. Cladistics 14: 209-220.
- Siddall ME, Whiting MF. 1999. Long-branch abstractions. Cladistics 15: 9-24.
- Slowinski JB, Lawson R. 2002. Snake phylogeny: evidence of nuclear and mitochondrial genes. Molecular Phylogenetics and Evolution 24: 194-202.
- Stimson A. 1969. Liste der rezenten Amphibien und Reptilien. Boidae. Das Tierreich 89: 1-49.
- Stull OG. 1932. Five new species of the family Boidae. Occasional Papers of the Boston Natural History Society 8: 25- 30.
- Stull OG. 1935. A check list of the family Boidae. Proceedings of the Boston Natural History Society 40: 387- 408.
- Swofford DL, Waddel PJ, Huelsenbeck JP, Foster PG, Lewis PO, Rogers JS. 2001. Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods. Systematic Biology 50: 525-539.
- Underwood G. 1976. A systematic analysis of boid snakes. In: Bellairs Ad'A, Cox CB, eds. Morphology and biology of reptiles. Linnean Society of London. Symposium Ser.3. London: Academic Press, 151-175.
- Underwood G, Stimson AF. 1990. A classification of pythons (Serpentes, Pythoninae). Journal of the Zoological Society of London 221: 565-603.
- Vidal N, Delmas AS, Hedges SB. 2007. The higher-level relationships of alethinophidian snakes inferred from seven nuclear and mitochondrial genes. In: Henderson RW, Powell R, eds. Biology of the boas and pythons. Eagle Mountain Utah: Eagle Mountain Publishing L.C, 27-33.
- Wagler J. 1830. Naturliches System der Amphibien, mit vorangehender Classification der Saugthiere und Vogel. Munchen, Stuttgart, & Tubingen: J. G. Cotta.
- Wallach V, Williams KL, Boundy J. 2014. Snakes of the world: a catalogue of living and extinct species. New York: CRC Press.
- Weins JJ. 1999. Polymorphism in systematics and comparative biology. Annual Review of Ecology and Systematics 30: 327-362.
- Weins JJ. 2003. Missing data, incomplete taxa, and phylogenetic accuracy. Systematic Biology 52: 528-538.
- Weins JJ, Hollingsworth BD. 2000. War of the iguanas: conflicting molecular and morphological phylogenies and longbranch attraction in iguanid lizards. Systematic Biology 49: 143-159.
- Wilcox TP, Zwickl DJ, Heath TA, Hillis DM. 2002. Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support. Molecular Phylogenetics and Evolution 25: 361- 367.
- Zwickl DJ, Hillis DM. 2002. Increased taxon sampling greatly reduces phylogenetic error. Systematic Biology 51: 588- 598.