Published June 1, 2021
| Version v2.0.0
Software
Open
VariantEffect/mavedb: 2.0.0
Creators
- 1. The Walter and Eliza Hall Institute of Medical Research
Description
This is a major update that includes numerous improvements, particularly in dataset validation.
Major- Saturation genome editing data is now supported, with a new
hgvs_tx
column that can describe splice variants. - The dataset search page has been rewritten to be more usable and more performant.
- Variants are now represented using the format defined by MAVE-HGVS. This is very similar to the previous Enrich2-like format, but please consult the documentation for key differences.
- Variants are now validated against the target sequence on upload.
- Additional raw data accessions (GEO, ArrayExpress) are now supported.
- A new admin page has been added to simplify database administration for staff.
- MaveDB can now be deployed using Docker Compose. Developers should consult the new developer documentation for instructions on how to get a local instance up and running.
Files
VariantEffect/mavedb-v2.0.0.zip
Files
(2.8 MB)
Name | Size | Download all |
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md5:8d2f0bc3cb92140d0764746a6fc1d864
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2.8 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/VariantEffect/mavedb/tree/v2.0.0 (URL)