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Published June 1, 2021 | Version v2.0.0
Software Open

VariantEffect/mavedb: 2.0.0

  • 1. The Walter and Eliza Hall Institute of Medical Research

Description

This is a major update that includes numerous improvements, particularly in dataset validation.

Major
  • Saturation genome editing data is now supported, with a new hgvs_tx column that can describe splice variants.
  • The dataset search page has been rewritten to be more usable and more performant.
  • Variants are now represented using the format defined by MAVE-HGVS. This is very similar to the previous Enrich2-like format, but please consult the documentation for key differences.
  • Variants are now validated against the target sequence on upload.
Minor
  • Additional raw data accessions (GEO, ArrayExpress) are now supported.
  • A new admin page has been added to simplify database administration for staff.
  • MaveDB can now be deployed using Docker Compose. Developers should consult the new developer documentation for instructions on how to get a local instance up and running.

Files

VariantEffect/mavedb-v2.0.0.zip

Files (2.8 MB)

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md5:8d2f0bc3cb92140d0764746a6fc1d864
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Additional details

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