Published May 31, 2021 | Version v1
Dataset Open

MicroRNA quantitative RT-PCR analysis of CMT1A Plasma

  • 1. University of Wisconsin-Madison
  • 2. Sanofi Translational research*
  • 3. University of Iowa

Description

Objective: To determine if microRNA's (miR) are elevated in the plasma of individuals affected by the inherited peripheral neuropathy Charcot-Marie-Tooth Disease, type 1A (CMT1A), miR profiling was employed to compare control and CMT1A plasma.

Methods: We undertook a screen of CMT1A and control plasma samples to identify miRs that are elevated in CMT1A using a pilot screen of plasma miR by next generation sequencing, followed by validation of selected miRs by quantitative PCR, and correlation with clinical data and protein biomarkers.

Results: After an initial pilot screen, a broader screen confirmed elevated levels of several muscle-associated miRNAs (known as myomiRs) along with a set of miRs that are highly expressed in Schwann cells of peripheral nerve. Comparison to other candidate biomarkers for CMT1A (e.g. Neurofilament L, NfL) measured on the same sample set shows a comparable elevation of several miRs and ability to discriminate cases from controls. In addition, the putative Schwann cell miRs correlate with a recently described TMPRSS5 biomarker that is also elevated in CMT1A plasma, and this protein is most highly expressed in Schwann cells.

Conclusions: These studies identify a set of miRs that are candidate biomarkers for clinical trials in CMT1A. Some of the miRs may reflect Schwann cell processes that underlie the pathogenesis of the disease.

Notes

The file contains Ct data from qRT-PCR for selected microRNA's in human plasma samples. Three of the miRNA's had been used for normalization purposes, as noted above. Other columns include de-identified patient numbers, diagnosis (CMT1A or control) and the CMTES/CMTNS neuropathy scores and Rasch-modified derivatives. In addition, age, nerve conduction velocity and compound muscle action potentials are provided. Missing values indicate that a given miRNA was not detected in a specific sample. 

Funding provided by: National Institutes of Health
Crossref Funder Registry ID: http://dx.doi.org/10.13039/100000002
Award Number: R21 TR003034

Funding provided by: National Institutes of Health
Crossref Funder Registry ID: http://dx.doi.org/10.13039/100000002
Award Number: U54 NS065712

Funding provided by: Charcot-Marie-Tooth Association
Crossref Funder Registry ID: http://dx.doi.org/10.13039/100002721
Award Number:

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Additional details

Related works

Is derived from
10.5281/zenodo.4818612 (DOI)