Published May 31, 2021 | Version 001
Dataset Open

PPIDomainMiner (PPIDM)

  • 1. Inria
  • 2. Université de Lorraine
  • 3. Ecole des Mines Nancy
  • 4. CNRS
  • 1. Inria
  • 2. CNRS

Description

This archive contains all the data associated with the following publication
PPIDomainMiner : Inferring domain-domain interactions from multiple sources of protein-protein interactions
Seyed Ziaeddine Alborzi, Amina Ahmed Nacer, Hiba Najjar, David W Ritchie and Marie-Dominique Devignes.
doi: https://doi.org/10.1101/2021.03.03.433732
to be published in PLOS Computational Biology in 2021.

The archive is organized as follows
A. Directory "Input Data" : all the files required to compute the PPIDM dataset
B. Directory "Output Data" : all result files
C. Directory "Evaluation Data" : all datasets used to evaluate the PPIDM dataset

Notes

This work was funded by Agence Nationale de la Recherche (grant numbers: ANR-11-MONU-006-02 and ANR-15-RHUS-0004), Inria Nancy Grand Est, and FEDER-Region Lorraine (CPER IT2MP). SZA was recipient of an Inria CORDI-S PhD fellowhip and AAN was recipient of a post-doctoral fellowship funded by the Region Lorraine and the Faculty Hospital of Nancy.

Files

PPIDMdata_2021.zip

Files (12.3 MB)

Name Size Download all
md5:7a6c06d9a511a1ed2e7b5e7dd5e7d726
12.3 MB Preview Download

Additional details

References

  • PPIDomainMiner : Inferring domain-domain interactions from multiple sources of protein-protein interactions Seyed Ziaeddine Alborzi, Amina Ahmed Nacer, Hiba Najjar, David W Ritchie and Marie-Dominique Devignes. doi: https://doi.org/10.1101/2021.03.03.433732 to be published in PLOS Computational Biology in 2021.