Published September 1, 2021 | Version 0.3.0
Software Open

Software and Products for "Pangenomics enables genotyping known structural variants in 5,202 diverse genomes"

Creators

  • 1. UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA
  • 2. Google Inc, 1600 Amphitheatre Pkwy, Mountain View, CA, USA
  • 3. Genomics Platform, Broad Institute, Cambridge, MA, USA
  • 4. Program in Medical and Population Genetics, Broad Institute, Cambridge, MA, USA
  • 5. Department of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO, USA
  • 6. Center for Public Health Genomics, University of Virginia, Charlottesville, VA, USA
  • 7. The Institute for Translational Genomics and Population Sciences, Department of Pediatrics, The Lundquist Institute for Biomedical Innovation at Harbor-UCLA Medical Center, Torrance, CA, USA
  • 8. UC Santa Cruz Genomics Institute, Santa Cruz, CA, USA; Howard Hughes Medical Institute, University of California, Santa Cruz, CA, USA
  • 9. Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, TN, USA

Description

This archive contains software source code and containers used in the paper "Pangenomics enables genotyping known structural variants in 5,202 diverse genomes", including snapshots of vg, toil-vg, and toil.

It also includes final re-usable data resources that may be of interest.

The code for each project is available under its respective license. As this archive includes entire containers, it includes installed versions of a large number of other packages not directly related to the current work, all of which are available under their respective licenses.

Files

archive.zip

Files (22.1 GB)

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md5:53578f12ba215d450d43add2287132e5
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Additional details

Related works

Is supplement to
Preprint: 10.1101/2020.12.04.412486 (DOI)