Features

• GUNC will now report the number of failed genomes if some fail when running in batch mode.

Bugfixes

• Fixed cases where number of mapped genes might be different when running smaller genomes individually vs grouped.
• Fixed cases where gunc would fail if - was in a sequence identifier.
• Fixed cases where contig colour in visualisation was incorrect.
• Fixed incorrect ordering of taxonomic levels in plot if user supplies them in an incorrect order.
• Allow GUNC to continue if some genomes fail diamond mapping.
• Fixed crash if diamond fails to map anything to GUNC reference.
• Fixed bug where GUNC goes into infinite loop if an input filename is merged.fa

Other

• class and order are now included in contig assignment output file (@aaronmussig)
• Fix pandas deprecation waring (@tmaklin)
• Added fixes for pandas FutureWarning (changing behaviour of Series.idxmax)