Published September 19, 2024
| Version 0.29.1
Software
Open
opencobra/cobrapy: 0.29.1
Creators
- Ali Ebrahim1
- Moritz E. Beber
- Synchon Mandal2
- Matthias König3
- Henning Redestig
- Christian Diener
- Dr. Scientist4
- Peter St. John5
- akaviaLab
- Hemant_Yadav
- Zak King6
- Nikolaus Sonnenschein7
- Maximilian Greil
- JuBra
- Maureen Carey8
- Ali Kaafarani9
- Benjamín Sánchez10
- Erik Cederstrand11
- Greg Medlock12
- Teddy Groves
- Dr. Daniel Weilandt
- Afif Elghraoui
- Svetlana Kutuzova (Galkina)
- Vivek Rai
- Alexandre Detiste
- Justin Taylor
- Marvin van Aalst
- SigitaR
- Wanderrful
- Achilles Rasquinha13
- 1. @DelfinaCare
- 2. Forschungszentrum Jülich
- 3. Humboldt University
- 4. Utah State University
- 5. @NVIDIA
- 6. Delfina
- 7. DTU Bioengineering
- 8. Tempus AI
- 9. @UnseenBio
- 10. Chr. Hansen
- 11. @novonesis
- 12. Vedanta Biosciences
- 13. @aws
Description
Release notes for cobrapy 0.29.1
New features
Fixes
- Fixes the incorrect bounds in the CycleFree loop removal.
- Fixes reduced costs and shadow prices not available when using non-convex models.
- Fixed a bug with SBML group parsing that affects the Debian package.
- Fixed a bug where load_matlab_model would not work with numpy 2.0.
Other
- Adding a duplicate boundary reaction (with
add_boundary) no longer errors, but instead just returns the existing reaction. - Automatic detection of the external compartment now recognizes CARVEME and GAPSEQ ids and will no longer show a warning for models generated with those tools.
Deprecated features
Backwards incompatible changes
Files
opencobra/cobrapy-0.29.1.zip
Files
(3.8 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:76c38587322b29b03447f1cb282f0feb
|
3.8 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Software: https://github.com/opencobra/cobrapy/tree/0.29.1 (URL)