Published April 26, 2021 | Version v1
Dataset Open

Molecular simulations and pre-analyzed data for 'Molecular simulations capture the transient exposure of a buried phosphorylation site in the autoinhibited state of a protein'

  • 1. University of Copenhagen

Description

All-atom MD simulations and pre-analyzed data of the Vav1 AD construct:
1) the `trajectories.tgz` directory contains all the molecular simulations (exploratory MD, MD shootings from different locations on the free energy landscape, WTMetaD and PBMetaD) in xtc format and without water; 
2) the `data.tgz` directory contains the values of the collective variables calculated from all the aforementioned simulations, the MetaD hills files and the topology files; 
3) the `plumed.tgz` directory contains the plumed files needed to reproduce and reweight the metadynamics simulations (WTMetaD and PBMetaD) and to calculate the CVs from simulations. 

Files

Files (9.6 GB)

Name Size Download all
md5:36eb5d70f6de98be37750a5c36ff6032
1.7 GB Download
md5:97d548d7564ca5c23dc04fe0ad18d6d0
307.4 kB Download
md5:62cce35fbfde643b4bb2f228360cc016
8.0 GB Download