Published April 26, 2021
| Version v1
Dataset
Open
Molecular simulations and pre-analyzed data for 'Molecular simulations capture the transient exposure of a buried phosphorylation site in the autoinhibited state of a protein'
Description
All-atom MD simulations and pre-analyzed data of the Vav1 AD construct:
1) the `trajectories.tgz` directory contains all the molecular simulations (exploratory MD, MD shootings from different locations on the free energy landscape, WTMetaD and PBMetaD) in xtc format and without water;
2) the `data.tgz` directory contains the values of the collective variables calculated from all the aforementioned simulations, the MetaD hills files and the topology files;
3) the `plumed.tgz` directory contains the plumed files needed to reproduce and reweight the metadynamics simulations (WTMetaD and PBMetaD) and to calculate the CVs from simulations.
Files
Files
(9.6 GB)
| Name | Size | Download all |
|---|---|---|
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md5:36eb5d70f6de98be37750a5c36ff6032
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1.7 GB | Download |
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md5:97d548d7564ca5c23dc04fe0ad18d6d0
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307.4 kB | Download |
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md5:62cce35fbfde643b4bb2f228360cc016
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8.0 GB | Download |