Published April 25, 2021
| Version v1
Dataset
Restricted
Methylated Amine Gene Inventory of Catabolism database (MAGICdb)
Authors/Creators
- 1. Colorado State Univeristy
- 2. Colorado State University
Description
MAGICdb is the Methylated Amine Gene Inventory of Catabolism database, an analysis of 6,341 gut-derived microbial genomes:
DataFileS2_FinalGeneCalling.xlsx- inventory of genes and genomes in MAGICdb
6341_genomes.tar.gz- methylated amine catabolism encoding genomes in MAGICdb (fasta format)
DataFileS3_ALL_NUCL_MethylamineGenes.fna- methylated amine genes in MAGICdb (fasta format)
predict_cvd_polished.zip- input data, code, and models for predicting cardiovascular disease from human metagenomic datasets using MAGICdb
Files
Restricted
The record is publicly accessible, but files are restricted. <a href="https://zenodo.org/account/settings/login?next=https://zenodo.org/records/4718083">Log in</a> to check if you have access.
Additional details
Funding
- National Institutes of Health
- Alternative routes of gut microbial methylamine metabolism that may limit trimethylamine N-oxide, a trigger for atherosclerosis. 1R01DK109345-01