Methylated Amine Gene Inventory of Catabolism database (MAGICdb)
Authors/Creators
- 1. Colorado State Univeristy
- 2. Colorado State University
Description
MAGICdb is the Methylated Amine Gene Inventory of Catabolism database, an analysis of 6,341 gut-derived microbial genomes:
DataFileS2_FinalGeneCalling.xlsx- inventory of genes and genomes in MAGICdb
6341_genomes.tar.gz- methylated amine catabolism encoding genomes in MAGICdb (fasta format)
DataFileS3_ALL_NUCL_MethylamineGenes.fna- methylated amine genes in MAGICdb (fasta format)
predict_cvd_from_MAGICdb_mapping.html- input data, code, and models for predicting cardiovascular disease from human metagenomic datasets using MAGICdb
metaP and metaT text files- contain output tables from mapping Abu-Ali, et al. metatranscriptome and Lloyd-Price, et al. metaproteome data to MAGICdb.
Node_table_042722_ANNOTATED.csv- EFI network node file with sequences for MAGIC database (Fig. 6).
Files
metaP_table.expanded.txt
Files
(7.3 GB)
| Name | Size | Download all |
|---|---|---|
|
md5:bdceab31b08b4d9b91db96bd2c137beb
|
7.2 GB | Download |
|
md5:ad1c8df7c816e58b4254effa44229484
|
850.5 kB | Download |
|
md5:2ed950307edb6a0d75faeea3dc37c467
|
15.4 MB | Download |
|
md5:75c52bfa9b583fb842358d551d279c8e
|
832.3 kB | Preview Download |
|
md5:a185a079ae2d685a23338c5ec1c56468
|
2.6 MB | Preview Download |
|
md5:e7a2fa2c85366ce6a62c00717614f78d
|
892.8 kB | Preview Download |
|
md5:346d148575b3079175af5b13b150e925
|
3.2 MB | Download |
Additional details
Funding
- National Institutes of Health
- Alternative routes of gut microbial methylamine metabolism that may limit trimethylamine N-oxide, a trigger for atherosclerosis. 1R01DK109345-01