SysBioChalmers/Human-GEM: Human 1.7.0

Published April 20, 2021 | Version v1.7.0

Software Open

Features (PR #245):
- a new column metMAID is added to metabolites.tsv, according to the plan proposed in #174
Features (PR #241):
- update reactions.tsv by adding associations to Rhea ids that mapped to 590 rxns so far
Fixes (PR #240):
- update annotation for mets m01778 and m02646, as suggested in #239:
Features (PR #237):
- add new function evalGeneEssentialityPred that can be used to assess gene essentiality predictions made by a GEM
Features (PR #234):
- complete the ids of rxnMAID in reactions.tsv by filling blank fields, as agreed in #174
Fixes (PR #230):
- remove the extra space at the end of the subsystem and reaction names
Style (PR #228):
- rename functions as proposed in #227
  - annotateModel --> annotateGEM
  - importHumanYaml --> importYaml
  - writeHumanYaml --> exportYaml
- replace branch devel with develop
Style (PR #223):
- re-organize files and folders as discussed in #190
  - move files, scripts, and models in data/ and code/ that are no longer maintained or in use to a .deprecated folder
  - add README file for data and code directories

Files

Name	Size	Download all
SysBioChalmers/Human-GEM-v1.7.0.zip md5:8f22838b874f5dfce485b7160b666fd8	9.8 MB	Preview Download

Is supplement to: https://github.com/SysBioChalmers/Human-GEM/tree/v1.7.0 (URL)

Citations

Oops! Something went wrong while fetching results.