Published June 28, 2021
| Version 0.2
Journal article
Open
Data and code from "A new paradigm for leprosy diagnosis based on host gene expression" article.
Authors/Creators
- 1. Oswaldo Cruz Foundation (FIOCRUZ)
- 2. Colorado State University
- 3. University of Bern
- 4. École Polytechnique Fédérale de Lausanne
- 5. Institut Pasteur
Description
Intermediate data and code for all analyses described in "A new paradigm for leprosy diagnosis based on host gene expression".
The files are organized into 4 main directories:
- Main RNA-seq analysis;
- Public data reanalysis;
- Correlation analyses;
- RNA-seq validation by RT-qPCR.
Some files are needed in between these directories. Therefore, all data should be downloaded and decompressed apropriately to allow re-running analyes
If you have any inquiries, please get in touch.
All code was tested in Linux with R 3.6.1 and with package versions according to what is listed in package_versions.txt.