Published April 12, 2021 | Version 0.1
Dataset Open

Functional Characterization of Splicing Regulatory Elements: Large Post-processed files

  • 1. UConn Health

Description

These are post-processed files associated with the analysis in the paper "Functional Characterization of Splicing Regulatory Elements" and are necessary to re-produce analysis in the paper. They are too large (uncompressed) to accompany the github repository (https://github.com/scottiadamson/Splicing_regulatory_elements_paper). Files here include a fasta file that has the sequences assayed in Vex-seq ("all_seqs.fa.gz"), as well as the information associated with their design ("SRE_pool_sequences_dups_hg19.tsv.gz"). There are also files that contain motif scores for sensitive and robust RBP binding sites ("mCross_scores_iCount.tsv.gz"), and for variant sequences studied in Vex-seq ("mCross_scores.tsv.gz", "RBNS_peak_strength_sensitive_robust.tsv.gz"). All other files in the tarball ("regression_outputs_trad.tar.gz ") are predictions and coefficients of regressions done to predict splicing based on the expression of other RBPs.

Files

Files (137.5 MB)

Name Size Download all
md5:e0f1ffd8168fba3b215ae3888b774db5
2.1 MB Download
md5:043e9e4858d2de4a76b77f0f570b6a08
3.2 MB Download
md5:faffccb5be9530e53fea0e7ff097b899
20.0 MB Download
md5:b5cfac3e4e4cf146ddb385bae3c7af73
18.9 MB Download
md5:434175dac710e1c318e0355d7a2e2960
88.5 MB Download
md5:beaec1533a2f0bd994ff2adab61a792f
4.7 MB Download