Published March 9, 2021 | Version 1.0
Dataset Open

Data from: Genetic structure and effective population size of Sydney rock oysters in eastern Australia

  • 1. Macquarie University
  • 2. University of Helsinki

Description

We provide a number of data files associated with the article "Genetic structure and effective population size of Sydney rock oysters in eastern Australia" (DOI: 10.1007/s10592-021-01343-4).

These include:
- VCF file generated following the SNP calling methods in the article. File contains genotype information for the primary sample set (n=363), filtered to retain biallelic SNPs with <25% missing data (75,231 SNPs). 
- Sample metadata, containing site ID, individual ID, and the latitude & longitude of sampling location.
- Main script used to generate data and conduct analyses described in the article.
- Zip folder containing files associated with demographic modelling using moments

Other relevant data can be found in the Electronic Supplementary Material for the article.

Files

Moments_modelling.zip

Files (675.4 MB)

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md5:0e6acd1149aec6f07962af3a2016912c
1.6 MB Preview Download
md5:c7651e9c247388c06edb344226b2e4b6
673.6 MB Download
md5:d870ae9de0c1d95957c081f9a3e54bca
117.9 kB Preview Download
md5:6be3630373e9830f151ec5999f9eaffe
13.2 kB Preview Download

Additional details

Related works

Is supplement to
Journal article: 10.1007/s10592-021-01343-4 (DOI)

Funding

Australian Research Council
Industrial Transformation Training Centres - Grant ID: IC130100009 IC130100009
Australian Research Council
Discovery Projects - Grant ID: DP150101363 DP150101363