Published March 8, 2021
| Version Feb2021
Dataset
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Mar2021 reference datasets for Mitohelper
Description
Reference datasets (Mar 2021 update) for Mitohelper (https://github.com/aomlomics/mitohelper)
Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to the Mitohelper's wiki for database construction pipeline.
I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information:
- mitofish.all.Mar2021.tsv (681,971 records; Mar 2021 MitoFish release)
- mitofish.12S.Feb2021.tsv (37,841 records)
- mitofish.COI.Feb2021.tsv (229,905 records)
II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets:
- 12S-seqs-derep-uniq.qza
- 12S-tax-derep-uniq.qza
- 12S-16S-18S-seqs.qza
- 12S-16S-18S-tax.qza
Files
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md5:5dab7ca7525e4eb878b3b13f1f1a7e4c
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md5:7ae52477e5d206cacd64b9146bc69397
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md5:094a30960c5d8f3fff333c32a2fded21
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md5:9a933320223f3fb1ec7f57d28942fd11
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md5:95fcebc0b6b1b8e578ca54c561b1037f
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455.4 MB | Download |