Published March 6, 2021 | Version v1
Dataset Open

Data from: Host population dynamics in the face of an evolving pathogen

  • 1. Cornell University
  • 2. Princeton University
  • 3. Virginia Tech

Description

1. Interactions between hosts and pathogens are dynamic at both ecological and evolutionary levels. In the resultant "eco-evolutionary dynamics" ecological and evolutionary processes affect each other. For example, the house finch (Haemorhous mexicanus) and its recently-emerged pathogen, the bacterium Mycoplasma gallisepticum, form a system in which evidence suggests that changes in bacterial virulence through time enhance levels of host immunity in ways that drive the evolution of virulence in an arms race.

2. We use data from two associated citizen science projects in order to determine whether this arms race has had any detectable effect at the population level in the northeastern United States.

3. We used data from two citizen science projects, based on observations of birds at bird feeders, which provide information on the long-term changes in sizes of aggregations of house finches (host population density), and the probabilities that these house finches have observable disease (disease prevalence).

4. The initial emergence of M. gallisepticum caused a rapid halving of house finch densities; this was then followed by house finch populations remaining stable or slowly declining. Disease prevalence also decreased sharply after the initial emergence and has remained low, although with fluctuations through time. Surprisingly, while initially higher local disease prevalence was found at sites with higher local densities of finches, this relationship has reversed over time.

5. The ability of a vertebrate host species, with a generation time of at least one year, to maintain stable populations in the face of evolved higher virulence of a bacterium, with generation times measurable in minutes, suggests that genetic changes in the host are insufficient to explain the observed population-level patterns. We suggest that acquired immunity plays an important role in the observed interaction between house finches and M. gallisepticum.

Notes

The data files in this package are designed to be read into an R script that is a supplemental document published with the paper with which this data archive is associated.  Running this R script will read in the data files, and then run all analyses and generate all output that are used in this paper. The ReadMe file associated with this archive describes all of the variables in the data tables within this data archive. Note that there are 2 versions of this ReadMe document: (1) an ASCII text version that should be universally readable, and (2) a PDF version for which formatting will make the contents more comprehensible by anyone who can view the contents of the PDF version.

Funding provided by: National Science Foundation
Crossref Funder Registry ID: http://dx.doi.org/10.13039/100000001
Award Number: 0094456

Funding provided by: National Science Foundation
Crossref Funder Registry ID: http://dx.doi.org/10.13039/100000001
Award Number: 0622705

Funding provided by: National Institutes of Health
Crossref Funder Registry ID: http://dx.doi.org/10.13039/100000002
Award Number: R01GM085232

Files

CalcLocs.csv

Files (72.1 MB)

Name Size Download all
md5:b2c80c81839e9614fc121cf17311ae8d
8.6 MB Preview Download
md5:f0623bab8ad31e86a8b32b8253521195
27.6 MB Preview Download
md5:ee0b17355675e5cbf86752395508c01b
31.3 MB Preview Download
md5:7b80e3b11b9030496b0edbc59c019d8d
4.3 MB Preview Download
md5:28f2f0c292741d3420ba414f88a7a689
192.4 kB Preview Download
md5:482ea1591c5a015f244189532c317565
21.8 kB Preview Download