Published February 19, 2021 | Version 1.0.0
Software Open

Used software and data for "Using the Longest Run Subsequence Problem within Homology-based Scaffolding"

Creators

  • 1. Algorithmic Bioinformatics, Heinrich Heine University Düsseldorf, Germany
  • 2. Max Planck Institute for Plant Breeding Research, Cologne, Germany; Faculty of Biology, LMU Munich, Germany
  • 3. Heinrich Heine University Düsseldorf, Germany
  • 4. Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich Heine University Düsseldorf, Germany; Max Planck Institute for Plant Breeding Research, Cologne, Germany; Faculty of Biology, LMU Munich, Germany
  • 5. Algorithmic Bioinformatics, Heinrich Heine University Düsseldorf, Germany; Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich Heine University Düsseldorf, Germany

Description

Contains used code, scripts and data for the publicaion "Using the Longest Run Subsequence Problem within Homology-based Scaffolding" by Sven Schrinner, Manish Goel, Michael Wulfert, Philipp Spohr, Korbinian Schneeberger and Gunnar W. Klau. The synthetic experiments and the code of the algorithms is placed in the `lrs` folder. The code is identical to the version 1.0.0, which is available as a PyPI package. The setup for the biological data is explained in `readme.md` in the `chroder` folder.

Notes

The corresponding publication will be submitted to "Algorithms for Molecular Biology", but is not accepted yet. Therefore this upload does not contain a reference to a publication yet.

Files

lrs-software-data.zip

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