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Published January 5, 2021 | Version Jan2021
Dataset Open

Jan2021 reference datasets for Mitohelper

  • 1. University of Miami
  • 2. Mississippi State University

Description

Reference datasets (Jan 2021 update) for Mitohelper (https://github.com/aomlomics/mitohelper)

Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to the Mitohelper's DevWiki for database construction pipeline.

I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information:

  • mitofish.all.Jan2021.tsv (668,366 records; Jan 2021 update)
  • mitofish.12S.Jan2021.tsv (37,314 records)
  • mitofish.COI.Jan2021.tsv (224,712 records)

II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets:

  • 12S-seqs-derep-uniq.qza 
  • 12S-tax-derep-uniq.qza 
  • 12S-16S-18S-seqs.qza 
  • 12S-16S-18S-tax.qza 

Files

Files (2.0 GB)

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md5:6507423105c2f498149cb2dd2b45faa6
105.4 MB Download
md5:43f443428d29c212d791fbf91fd82717
7.3 MB Download
md5:9ed704b37dedce9985264b0056ec84fc
8.4 MB Download
md5:808c5d3cda4a86d326a61153f7fef7d2
474.5 kB Download
md5:c766dd7e8d896f0a4c56229fcbe32004
193.1 MB Download
md5:d7530e77ca2131137ef756f8d1ee098a
1.2 GB Download
md5:0b4cc06567bc9070b2edb24ad9c769dc
450.6 MB Download