Published January 5, 2021
| Version Jan2021
Dataset
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Jan2021 reference datasets for Mitohelper
Description
Reference datasets (Jan 2021 update) for Mitohelper (https://github.com/aomlomics/mitohelper)
Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to the Mitohelper's DevWiki for database construction pipeline.
I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information:
- mitofish.all.Jan2021.tsv (668,366 records; Jan 2021 update)
- mitofish.12S.Jan2021.tsv (37,314 records)
- mitofish.COI.Jan2021.tsv (224,712 records)
II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets:
- 12S-seqs-derep-uniq.qza
- 12S-tax-derep-uniq.qza
- 12S-16S-18S-seqs.qza
- 12S-16S-18S-tax.qza
Files
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md5:6507423105c2f498149cb2dd2b45faa6
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md5:43f443428d29c212d791fbf91fd82717
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md5:9ed704b37dedce9985264b0056ec84fc
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md5:808c5d3cda4a86d326a61153f7fef7d2
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474.5 kB | Download |
md5:c766dd7e8d896f0a4c56229fcbe32004
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193.1 MB | Download |
md5:d7530e77ca2131137ef756f8d1ee098a
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1.2 GB | Download |
md5:0b4cc06567bc9070b2edb24ad9c769dc
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450.6 MB | Download |