Jupyter Notebook for Protein Modelling using MODELLER

Run Modeller for Protein Modelling using Python and Jupyter Notebooks.

Run Modeller, Generate plots, Visualize 3D models of proteins within Jupyter Notebook

The Notebook includes both scripts as well as sample output, so kindly download and load to Jupyter Notebook.

Packages required

modeller numpy matplotlib pylab nglview

Notebooks

1. Basic Protein Modelling with single template - model_basic1.ipynb

2. Advanced Protein Modelling with multiple templates - advModel.ipynb

3. Loop refinement for the models generated -

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Whoever finds, command-line is difficult to start, make use of these notebooks to start exploring protein modelling.

Personal webpage : https://bit.ly/giribio20

Kindly cite this notebook in your publications if you use it for calculations.

Please cite as : Girinath G. Pillai, NyroModelleNotebook v1., 2020. https://doi.org/10.5281/zenodo.4294751

Github: https://github.com/giribio/ModellerNotebooks