There is a newer version of the record available.

Published November 6, 2020 | Version v1.2.4
Software Open

andersen-lab/ivar: 1.2.4

Creators

  • 1. The Scripps Research Institute
  • 2. @wtsi-npg @samtools
  • 3. Scripps Research
  • 4. Faculty of Computer Science, Dalhousie University
  • 5. Canadian Food Inspection Agency

Description

  • ivar trim now has -k flag to mark all reads that fail filters as BAM_FQCFAIL and write to output BAM.
  • ivar trim now considers reads with insert size less than read length as unpaired and trims both forward and reverse primers in these cases. Details in issue https://github.com/andersen-lab/ivar/issues/73
  • ivar trim will exclude paired end sequencing reads from aberrant amplicons that cross the expected amplicon boundaries. Details in issue https://github.com/andersen-lab/ivar/issues/75

Files

andersen-lab/ivar-v1.2.4.zip

Files (949.4 kB)

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Additional details

Related works

Is supplement to
https://github.com/andersen-lab/ivar/tree/v1.2.4 (URL)