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Published October 26, 2020 | Version 0.9.1
Software Open

vanheeringen-lab/genomepy: Version 0.9.1

Creators

  • 1. Radboud University
  • 2. @bhi-kimlab
  • 3. @github

Description

[0.9.1] - 2020-09-01 Added
  • genomepy install flag -k/--keep-alt to keep alternative regions
  • argparse custom type for a genome command line argument
Changed
  • added retries to UCSC and NCBI
  • added retries to Travis tests
  • Bucketcache improvements
  • genomepy search keeps searching after an exact match is found
  • genomepy install removes alternative regions by default
Fixed
  • genomepy clean wont complain when there is nothing to clean
  • properly gzip the annotation.gtf if it was unzipped during sanitizing
  • genomepy install can use the URL provider again
  • genomepy install with -f/--force will overwrite previouse sizes and gaps files

Files

vanheeringen-lab/genomepy-0.9.1.zip

Files (498.1 kB)

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md5:a531f40e494ac6ed76121b2d109cde70
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Additional details

Related works

Is supplement to
https://github.com/vanheeringen-lab/genomepy/tree/0.9.1 (URL)