Published September 2, 2020
| Version v1.1
Software
Open
Apeglm v1.10.0 Source Code
- 1. University of North Carolina at Chapel Hill
Description
This repository contains the source code for version 1.10.0 of the apeglm package. This version was used in the Zitovsky and Love 2019 paper. If any material in this repository is used for original research leading to published work, or is referenced in any way, please cite Zhu, Ibrahim and Love 2018. If any of the code written for fitting beta-binomial models is used or referenced, please cite Zitovsky and Love 2019 in addition to Zhu, Ibrahim and Love 2018. Material from this repository are available under the terms of the GNU General Public License v3.0 (GPL-3).
Apeglm provides Bayesian shrinkage estimators for effect sizes for a variety of GLM models, using approximation of the posterior for individual coefficients.
Files
apeglm-v1.10.0.zip
Files
(1.1 MB)
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Additional details
Related works
- Is supplement to
- Journal article: https://f1000research.com/articles/8-2024 (URL)
References
- Anqi Zhu, Joseph G. Ibrahim and Michael I. Love. Heavy-tailed prior distributions for sequence count data: Re-moving the noise and preserving large differences. Bioinformatcs, 35(12):2084–2092, November 2018. doi: 10.1093/bioinformatics/bty895.
- Joshua P. Zitovsky and Michael I. Love. Fast Effect Size Shrinkage Software for Beta-Binomial Models of Allelic Imbalance. F1000Research, September 2019. doi: 10.12688/f1000research.20916.1