Cantemist Silver Standard: Participant predictions in SEPLN IberLEF2020 - Spanish oncology clinical cases coded in ICD-O

Introduction

Predictions in the background set of Cantemist participants.

Zip structure

One directory per Cantemist subtask. Within each Cantemist subtask directory, there is one directory per team that contains the prediction runs.

Format

The text documents are distributed in plain text files, UTF-8 encoding.
The CodiEsp Silver Standard annotations have the following format:

For the sub-tracks Cantemist-NER and Cantemist-Norm, the files are in Brat format.

For the sub-track Cantemist-Coding files have the following fields:

articleID  ICDO-code 

Resources:

• Web
• Citation: Miranda-Escalada, A., Farré, E., & Krallinger, M. (2020). Named entity recognition, concept normalization and clinical coding: Overview of the cantemist track for cancer text mining in spanish, corpus, guidelines, methods and results. In Proceedings of the Iberian Languages Evaluation Forum (IberLEF 2020), CEUR Workshop Proceedings.
• Gold Standard corpus
• Annotation guidelines
• YouTube presentations
• Participant codes

All credit to Cantemist participants. 

For more information, visit the track webpage: http://temu.bsc.es/cantemist/ or email us at encargo-pln-life@bsc.es