Published November 14, 2025 | Version v3.4.0
Software Open

maxplanck-ie/snakepipes: v3.4.0

Authors/Creators

  • 1. Genedata AG
  • 2. Max Planck Institute for Immunobiology and Epigenetics
  • 3. Utrecht University
  • 4. remi.montagne@curie.fr
  • 5. ANSES Swine Immunology Virology Unit
  • 6. DKTK/DKFZ
  • 7. CeMM

Description

  • HistoneHMM was moved to peakCaller and will only be run if invoked. Differential binding for histoneHMM was added.
  • rMats multicomp is fixed.
  • Chipqc was fixed.
  • A cookbook section was added to documentation.
  • Velocyto was deprecated from scRNAseq workflow in mode STARsolo.
  • Cell barcodes for pre-calculated scRNAseq kits are now included with installation.

Files

maxplanck-ie/snakepipes-v3.4.0.zip

Files (53.8 MB)

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Additional details

Related works

Is supplement to
Software: https://github.com/maxplanck-ie/snakepipes/tree/v3.4.0 (URL)

Software

Repository URL
https://github.com/maxplanck-ie/snakepipes