Quantified dataset: 4 cell lines

This repository contains the quantified single cell dataset for the '4 cell line' spheroid physiology experiment described in:

"A quantitative analysis of the interplay of environment, neighborhood and cell state in 3D spheroids"

https://www.biorxiv.org/content/10.1101/2020.07.24.219659v1

This is an export of the processed dataset after quality control. Please consult the README.txt for a description of the data.

For the complete analysis starting at raw data and producing the plots, please look at the code repository:

10.5281/zenodo.4071861

This is a prelimnary export for testing. The format might still change upon feedback.

If you have any feedback please contact: vito.zanotelli (at) uzh.ch