Published December 31, 2017
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Phylogenetic relationships and morphology of the Pristimantis leptolophus species group (Amphibia: Anura: Brachycephaloidea), with the recognition of a new species group in Pristimantis Jiménez de la Espada, 1870
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González-Durán, Gustavo A., Targino, Mariane, Rada, Marco, Grant, Taran (2017): Phylogenetic relationships and morphology of the Pristimantis leptolophus species group (Amphibia: Anura: Brachycephaloidea), with the recognition of a new species group in Pristimantis Jiménez de la Espada, 1870. Zootaxa 4243 (1), DOI: 10.11646/zootaxa.4243.1.2
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- https://www.checklistbank.org/dataset/36286
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- urn:lsid:zoobank.org:pub:B4D35FB5-BC82-426C-BFCF-4EEF4D6EAFE6
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- urn:lsid:plazi.org:pub:1251617FA046FFE4FFFFC774FF95BA48
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- http://publication.plazi.org/id/1251617FA046FFE4FFFFC774FF95BA48
References
- Baker, A. (2003) Quantitative parsimony and explanatory power. The British Journal for the Philosophy of Science, 54 (2), 245-259.
- Barnes, E.C. (2000) Ockham's Razor and the Anti-Superfluity Principle. Erkenntnis, 353-374.
- Bremer, K. (1994) Branch support and tree stability. Cladistics, 10 (3), 295-304. https://doi.org/10.1111/j.1096-0031.1994.tb00179.x
- Boulenger, G.A. (1897) The tailless batrachians of Europe. printed for the Ray Society, London, 264 pp. https://doi.org/10.5962/bhl.title.52023
- Duellman, W.E. & Trueb, L. (1994) Biology of Amphibians. Johns Hopkins University Press, Baltimore, Maryland, 670 pp.
- Duellman, W.E. & Lehr, E. (2009) Terrestrial-breeding frogs (Strabomantidae) in Peru. Nature und Tier Verlag, Munster, 384 pp.
- Frost, D.R. (2016) Amphibian Species of the World: an Online Reference. Version 6.0. American Museum of Natural History, New York, USA. Available from: http://research.amnh.org/herpetology/amphibia/index.html (accessed 19 June 2016)
- Grant, T. & Kluge, A.G. (2008a) Clade support measures and their adequacy. Cladistics, 24 (6), 1051-1064. https://doi.org/10.1111/j.1096-0031.2008.00231.x
- Grant, T. & Kluge, A.G. (2008b) Credit where credit is due: the Goodman-Bremer support metric. Molecular Phylogenetics and Evolution, 49 (1), 405-406.
- Grant, T. & Kluge, A.G. (2009) Perspective: Parsimony, explanatory power, and dynamic homology testing. Systematics and Biodiversity, 7 (4), 357-363.
- Goloboff, P.A. (1996) Methods for faster parsimony analysis. Cladistics, 12 (3), 199-220. https://doi.org/10.1111/j.1096-0031.1996.tb00009.x
- Goloboff, P.A. (1999) Analyzing large data sets in reasonable times: solutions for composite optima. Cladistics, 15 (4), 415- 428.
- https://doi.org/10.1111/j.1096-0031.1999.tb00278.x
- Gonzalez-Duran, G.A. (2016) A new small frog species of the genus Pristimantis (Anura: Craugastoridae) from the northern Paramos of Colombia. Zootaxa, 4066 (4), 421-437.
- Goodman, M., Weiss, M.L. & Czelusniak, J. (1982) Molecular evolution above the species level: Branching pattern, rates, and mechanisms. Systematic Zoology, 31 (4), 376-399.
- Griffiths, I. (1954) On the "otic element" in Amphibia Salientia. Proceedings of the Zoological Society of London, 124 (1), 35- 50.
- https://doi.org/10.1111/j.1096-3642.1954.tb01476.x
- Guayasamin, J.M. (2004) The Eleutherodactylus orcesi species group (Anura: Leptodactylidae): comparative osteology and comments on its monophyly. Herpetological Monographs, 18 (1), 142-174. https://doi.org/10.1655/0733-1347(2004)018[0142:TEOSGA]2.0.CO;2
- Hedges, S.B., Duellman, W.E. & Heinicke, M.P. (2008) New World direct-developing frogs (Anura, Terrarana), molecular phylogeny, classification, biogeography, and conservation. Zootaxa, 1737, 1-182.
- Heinicke, M.P., Duellman, W.E. & Hedges, S.B. (2007) Major Caribbean and Central American frog faunas originated by oceanic dispersal. Proceedings of the National Academy of Sciences, 104 (24), 10092-10097. https://doi.org/10.1073/pnas.0611051104
- Heinicke, M.P., Barrio-Amoros, C.L. & Hedges, S.B. (2015) Molecular and morphological data support recognition of a new genus of New World direct-developing frog (Anura: Terrarana) from an under-sampled region of South America. Zootaxa, 3986 (2), 151-172.
- Katoh, K., Kuma, K.I., Toh, H. & Miyata, T. (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic acids research, 33 (2), 511-518.
- Kearse, M., Moir, R., Wilson, A., Stones-Havas, S., Cheung, M., Sturrock, S., Buxton, S., Cooper, A., Markowitz, S., Duran, C., Thierer, T., Ashton, B., Meintjes, P. & Drummond, A. (2012) Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics, 28, 1647-1649. https://doi.org/10.1093/bioinformatics/bts199
- Kluge, A.G. (2001) Parsimony with and without scientific justification. Cladistics, 17, 199-210. https://doi.org/10.1006/clad.2001.0164
- Kluge, A.G. & Grant, T. (2006) From conviction to anti- superfluity: old and new justifications of parsimony in phylogenetic inference. Cladistics, 22 (3), 276-288.
- https://doi.org/10.1111/j.1096-0031.2006.00100.x
- Liu, C. (1935) Types of vocal sac in the Salientia. Proceedings of the Boston Society of Natural History, 41 (3), 19-40.
- Lynch, J.D. (1979) The identity of Eleutherodactylus vertebralis (Boulenger) with the description of a new species from Colombia and Ecuador (Amphibia: Leptodactylidae). Journal of Herpetology, 13, 411-418. https://doi.org/10.2307/1563475
- Lynch, J.D. (1980) New species of Eleutherodactylus of Colombia (Amphibia: Leptodactylidae). I: Five new species from the Paramos of the Cordillera Central. Caldasia, 13 (61), 165-188. Avaliable from: http://www.jstor.org/stable/43406131 (Accessed 13 Mar. 2017)
- Lynch, J.D. (1981) Two new species of Eleutherodactylus from western Colombia (Amphibia: Anura: Leptodactylidae). Occasional Papers of the Museum of Zoology, University of Michigan, 697, 1-12.
- Lynch, J.D. (1991) New diminutive Eleutherodactylus from the Cordillera Central of Colombia (Amphibia: Leptodactylidae). Journal of Herpetology, 25 (3), 344-352.
- Lynch, J.D. (1993) The value of the m. depressor mandibulae in phylogenetic hypotheses for Eleutherodactylus and its allies (Amphibia: Leptodactylidae). Herpetologica, 49 (1)32-41. Avaliable from: http://www.jstor.org/stable/3892684 (Accessed 13 Mar. 2017)
- Lynch, J.D. (1994) A new species of high-altitude frog (Eleutherodactylus: Leptodactylidae) from the Cordillera Oriental of Colombia. Revista de la Academia Colombiana de Ciencias Exactas, Fisicas y Naturales, 19, 195-203.
- Lynch, J.D. (1995) Three new species of Eleutherodactylus (Amphibia: Leptodactylidae) from the Paramos of the Cordillera Occidental of Colombia. Journal of Herpetology, 29 (4), 513-521.
- Lynch, J.D. (1998) New species of Eleutherodactylus from the Cordillera Occidental of western Colombia with a synopsis of the distributions of species in western Colombia. Revista de la Academia Colombiana de Ciencias Exactas Fisicas y Naturales, 22, 117-148.
- Lynch, J.D. & Ruiz-Carranza. P.M. (1983) New frogs of the genus Eleutherodactylus from the Andes of southern Colombia. Transactions of the Kansas Academy of Science, 86, 99-112.
- Lynch, J.D., Ruiz-Carranza, P.M. & Ardila-Robayo. M.C. (1994) The identities of the Colombian frogs confused with Eleutherodactylus latidiscus (Boulenger) (Amphibia: Anura: Leptodactylidae). Occasional Papers of the Museum of Natural History, University of Kansas, 170, 1-42.
- Lynch, J.D. & Ruiz-Carranza, P.M. (1996) New sister-species of Eleutherodactylus from the Cordillera Occidental of southwestern Colombia (Amphibia: Salientia: Leptodactylidae). Revista de la Academia Colombiana de Ciencias Exactas, Fisicas y Naturales, 20, 347-363.
- Lynch, J.D. & Duellman, W.E. (1997) Frogs of the genus Eleutherodactylus (Leptodactylidae) in western Ecuador, systematics, ecology, and biogeography. University of Kansas Natural History Museum Special Publications, 23, 1-236. https://doi.org/10.5962/bhl.title.7951
- Lynch, J.D. & Rueda-Almonacid, J.V. (1998) New frogs of the genus Eleutherodactylus from the eastern flank of the northern Cordillera Central of Colombia. Revista de la Academia Colombiana de Ciencias Exactas, Fisicas y Naturales, 22 (85), 561-570.
- Mendoza, A.M., Ospina, O.E., Cardenas-Henao, H. & Garcia-R, J.C. (2015) A likelihood inference of historical biogeography in the world's most diverse terrestrial vertebrate genus: Diversification of direct-developing frogs (Craugastoridae: Pristimantis) across the Neotropics. Molecular phylogenetics and evolution, 85, 50-58. https://doi.org/10.1016/j.ympev.2015.02.001
- Nixon, K.C. (1999) The parsimony ratchet, a new method for rapid parsimony analysis. Cladistics, 15 (4), 407-414. https://doi.org/10.1111/j.1096-0031.1999.tb00277.x
- Ortega-Andrade, H.M. & Venegas, P.J. (2014) A new synonym for Pristimantis luscombei (Duellman and Mendelson 1995) and the description of a new species of Pristimantis from the upper Amazon basin (Amphibia: Craugastoridae). Zootaxa, 3895 (1), 031-057.
- Padial, J.M., Castroviejo-Fisher, S., Kohler, J., Domic, E. & De la Riva, I. (2007) Systematics of the Eleutherodactylus fraudator species group (Anura: Brachycephalidae). Herpetological Monographs, 21 (1), 213-240. https://doi.org/10.1655/06-007.1
- Padial, J.M., Grant, T. & Frost, D.R. (2014a) Molecular systematics of terraranas (Anura: Brachycephaloidea) with an assessment of the effects of alignment and optimality criteria. Zootaxa, 3825 (1), 001-132. https://doi.org/10.11646/zootaxa.3825.1.1
- Padial, J.M., Grant, T. & Frost, D.R. (2014b) Corrections to "Padial et al. (2014) Molecular systematics of terraranas (Anura: Brachycephaloidea) with an assessment of the effects of alignment and optimality criteria". Zootaxa, 3827 (4), 599-600. https://doi.org/10.11646/zootaxa.3827.4.10
- Pinto-Sanchez, N.R., Ibanez, R., Madrinan, S., Sanjur, O.I., Bermingham, E. & Crawford, A.J. (2012) The great American biotic interchange in frogs: Multiple and early colonization of Central America by the South American genus Pristimantis (Anura: Craugastoridae). Molecular Phylogenetics and Evolution, 62 (3), 954-972.
- Popper, K.R. (1959) The logic of scientific discovery. Hutchinson, London, 513 pp.
- Popper, K.R. (1983) Conjectures and Refutations. The growth of scientific knowledge (essays and lectures). Routledge & Kegan Paul Limited, London, 417 pp.
- Pyron, R.A. (2014) Biogeographic analysis reveals ancient continental vicariance and recent oceanic dispersal in amphibians. Systematic Biology, 63 (5), 779-797.
- Rivera-Correa, M. & Daza, J.M. (2016) Molecular phylogenetics of the Pristimantis lacrimosus species group (Anura: Craugastoridae) with the description of a new species from Colombia. Acta Herpetologica, 11 (1), 31-45. https://doi.org/10.13128/Acta_Herpetol-16434
- Rivero, J.A. & Serna, M.A. (1988 "1987") Tres nuevas especies de Eleutherodactylus (Amphibia, Leptodactylidae) de Antioquia, Colombia. Caribbean Journal of Science, 23, 386-399.
- Rivera-Prieto, D.A., Rivera-Correa, M. & Daza-R. J.M. (2014) A new colorful species of Pristimantis (Anura: Craugastoridae) from the eastern flank of the Cordillera Central in Colombia. Zootaxa, 3900 (2), 223-242. https://doi.org/10.11646/zootaxa.3900.2.3
- Rueda-Almonacid, J.V., Lynch, J.D. & Galvis, P.A. (2003) Una nueva especie de anfibio (Anura: Leptodactylidae) de los Alrededores de la Sabana de Bogota, Colombia. Revista de la Academia colombiana de ciencias exactas, fisicas y naturales, 27 (104), 461.
- Sabaj-Perez, M.H. (2014) Standard symbolic codes for institutional resource collections in herpetology and ichthyology: an Online Reference. Version, 5, 22. Available from: http://asih.org/sites/default/files/documents/resources/ symbolic_codes_for_collections_v5.0_sabajperez_2014.pdf (accessed 13 February 2017)
- Sankoff, D. (1975) Minimal mutation trees of sequences. SIAM Journal on Applied Mathematics, 28 (1), 35-42. https://doi.org/10.1137/0128004
- Savage, J.M. (1987) Systematics and distribution of the Mexican and Central American rainfrogs of the Eleutherodactylus gollmeri group (Amphibia: Leptodactylidae). Fieldiana, 33, 1-57.
- Starrett, P.A. (1968) The Phylogenetic Significance of the Jaw Musculature in Anuran Amphibians. Ph. D. Dissertation, University of Michigan, Ann Arbor, Michigan.
- Taylor, W.R. & Van Dyke, G.C. (1985) Revised procedures for staining and clearing small fishes and other vertebrates for bone and cartilage study. Cybium, 9 (2), 107-119.
- Trueb, L. (1973) Patterns of cranial diversity among the Lissamphibia. In: Hanken, J. & Hall, B.K. (Eds.), The skull. Fol. 2. Patterns of structural and systematic diversity. The University of Chicago Press, Chicago, pp. 255-343.
- Varon, A. & Wheeler, W.C. (2012) The tree alignment problem. BMC bioinformatics, 13 (1), 293. https://doi.org/10.1186/1471-2105-13-293
- Varon, A. & Wheeler, W.C. (2013) Local search for the generalized tree alignment problem. BMC bioinformatics, 14 (1), 1. https://doi.org/10.1186/1471-2105-14-66
- Wheeler, W.C., Arango, C.P., Grant, T., Janies, D., Varon, A., Aagesen, L., Faivovich, J., D'Haese, C., Smith, W.L. & Giribet, G. (2006) Dynamic Homology and Phylogenetic Systematics, A Unified Approach Using POY. American Museum of Natural History, New York, 365 pp.
- Wheeler, W.C., Lucaroni, N., Hong, L., Crowley, L.M. & Varon, A. (2015) POY version 5: phylogenetic analysis using dynamic homologies under multiple optimality criteria. Cladistics, 31 (2), 189-196. https://doi.org/10.1111/cla.12083.x
- Wheeler, W.C. (1996) Optimization alignment: the end of multiple sequence alignment in phylogenetics?. Cladistics, 12 (1), 1- 9.
- https://doi.org/10.1111/j.1096-0031.1996.tb00189.x
- Wheeler, W.C. (2003a) Iterative pass optimization of sequence data. Cladistics, 19 (3), 254-260. https://doi.org/ 10.1111/j.1096-0031.2003.tb00368.x
- Wheeler, W.C. (2003b) Implied alignment: a synapomorphy- based multiple- sequence alignment method and its use in cladogram search. Cladistics, 19 (3), 261-268.
- https://doi.org/10.1111/j.1096-0031.2003.tb00369.x
- Yanez-Munoz, M.H., Meza-Ramos, P., Cisneros-Heredia, D.F. & Reyes-Puig, J.P. (2011 "2010") Descripcion de tres nuevas especies de ranas del genero Pristimantis (Anura: Terrarana: Strabomantidae) de los bosques nublados del Distrito Metropolitano de Quito, Ecuador. Avances en Ciencias e Ingenierias, Seccion B, Quito 2 (3), B16-B27.