Published April 10, 2024 | Version v1.1.0
Software Open

Elephant 1.1.0

Creators

  • 1. Institute for Advanced Simulation (IAS-6), Jülich Research Centre, Jülich, Germany
  • 2. BioMEMS Lab, University of Applied Sciences Aschaffenburg, Germany

Description

New functionality and features

  • New method "Total spiking probability edges" (TPSE) for inferring functional connectivity (https://github.com/NeuralEnsemble/elephant/pull/560).

Bug fixes

  • Fixed expired SciPy deprecations and breaking changes related to sp.sqrt, ensuring continued compatibility with the latest version of SciPy (https://github.com/NeuralEnsemble/elephant/pull/616).
  • Addressed failing unit tests for neo_tools with Neo 0.13.0, ensuring compatibility with the latest Neo release (https://github.com/NeuralEnsemble/elephant/pull/617).

Documentation

  • Fixed a bug in the CI docs runner to resolve formatting issues, ensuring documentation build is tested (https://github.com/NeuralEnsemble/elephant/pull/615).

Other changes

  • added Python 3.12 CI runner to ensure compatibility with the latest Python language features (https://github.com/NeuralEnsemble/elephant/pull/611).
  • Integrated Trials object with GPFA, allowing for a more formal way of specifying trials (https://github.com/NeuralEnsemble/elephant/pull/610).

Selected dependency changes

  • scipy>=1.10.0
  • Support for Python 3.12

Files

NeuralEnsemble/elephant-v1.1.0.zip

Files (2.8 MB)

Name Size Download all
md5:bac914ac4d52b5cfb8c06c577226abbf
2.8 MB Preview Download

Additional details

Related works

Is documented by
Journal article: 10.12751/incf.ni2018.0019 (DOI)

Funding

HBP – The Human Brain Project 604102
European Commission
HBP SGA1 – Human Brain Project Specific Grant Agreement 1 720270
European Commission
HBP SGA2 – Human Brain Project Specific Grant Agreement 2 785907
European Commission
HBP SGA3 – Human Brain Project Specific Grant Agreement 3 945539
European Commission