Published February 9, 2022 | Version v3.7.0
Software Open

ropensci/rgbif: rgbif v3.7.0

  • 1. @ourresearch
  • 2. INBO
  • 3. Nielsen
  • 4. @inbo
  • 5. Florida Museum of Natural History
  • 6. @ucberkeley
  • 7. Global Biodiversity Information Facility
  • 8. @gbif
  • 9. College of Charleston
  • 10. Berkeley Institute for Data Science
  • 11. UCLA
  • 12. University of Washington
  • 13. University of Melbourne
  • 14. Australian Antarctic Division

Description

There is a new rgbif maintainer: John Waller.

NEW FEATURES
  • derived_dataset() : New function to register a cleaned or modified dataset on GBIF for citation. (#467)
  • name_backbone_checklist() : New function that takes a list, vector, or data.frame of scientific names and asynchronously matches them to the backbone. (#475)
  • pred_isnull() : New predicate function that includes NULL values from a column in the download. (#489)
  • occ_download.print() : Now prints out much more information including a DOI and citation. (#494)
DEPRECATED
  • gbif_citation.gbif() : it is no longer considered best practice to generate a citation from occ_search() or occ_data(). We recommend occ_download() or derived_dataset() instead. (#494)
MINOR IMPROVEMENTS
  • occ_download_wait() and occ_download_meta() : now accept a class character download key directly. The keys does do not need to be class "occ_download". (#487)
  • name_backbone() : now returns new columns "verbatim_name", "verabtim_genus" ect. that the user has supplied. This makes it easier for the user to track what has been matched. The verbose argument also has been un-retired. If verbose=TRUE, more results will be returned in a single data.frame. (#475)
  • gbif_citation() : will now accept a download key directly.
  • occ_download_get() : Does not throw an error if the data is already present and overwrite=FALSE, it will just give a warning and return the already present dataset. This allows users to run occ_download_get(key) %>% occ_download_import() multiple times without re-downloading the same file with overwrite=TRUE.
  • download_predicate_dsl() : "publishingOrg" now added as a download key. (#496) key_lkup now includes GBIF-style uppercase keys as well. So pred("TAXON_KEY",212) and pred("taxonKey",212) will both work.
DOCUMENTATION

Wrote new articles highlighting new features and encouraging the use of occ_download() over occ_search().

New articles:

BUG FIXES
  • occ_download_import() : fixed bug related to select argument. (#479)
  • map_fetch() : fixed bug related to sp::CRS (#497)

Files

ropensci/rgbif-v3.7.0.zip

Files (10.4 MB)

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