PartSeg - segmentation and reconstruction tool for 3D microscopy images

Published July 10, 2025 | Version v0.16.3

Software Open

1. Centre of New Technologies, University of Warsaw, Warsaw, Poland; Institute of Informatics, University of Warsaw, Warsaw, Poland
2. Nencki Institute of Experimental Biology, Polish Academy of Sciences, Warsaw, Poland
3. Institute of Informatics, University of Warsaw, Warsaw, Poland

1. Centre of New Technologies, University of Warsaw, Warsaw, Poland; Faculty of Mathematics and Information Science, Warsaw University of Technology, Warsaw, Poland

0.16.3 - 2025-07-10

[Automatic] Constraints upgrades: napari, numpy, pydantic, sentry-sdk, tifffile, vispy (#1273)
[Automatic] Constraints upgrades: h5py, ipython, magicgui, numpy, pandas, pydantic, requests, sentry-sdk, superqt, tifffile, xlrd (#1276)
[Automatic] Constraints upgrades: numpy, pygments, scipy, simpleitk, superqt, xlsxwriter (#1278)
[Automatic] Constraints upgrades: ipython, napari, partsegcore-compiled-backend, psygnal, sentry-sdk (#1281)

Block sentry==3.0.0a1 for pre-tests (#1272)
Add fallback version for setuptools_scm (#1271)
[pre-commit.ci] pre-commit autoupdate (#1270)
Use ubuntu 22.04 when building pyinstaller bundle (#1275)
[pre-commit.ci] pre-commit autoupdate (#1274)
[pre-commit.ci] pre-commit autoupdate (#1277)
Block sentry alpha 3.0.0a1 and 3.0.0a2 (#1279)
Block pytest-qt==4.5.0 (for pyside2 compatibility) (#1282)
[pre-commit.ci] pre-commit autoupdate (#1280)
Migrate Windows images from 2019 to 2022 in Azure Pipelines and GitHub Actions (#1284)

Name	Size	Download all
4DNucleome/PartSeg-v0.16.3.zip md5:8f70ccb3f5cd086b62a7e3d0fe223324	7.8 MB	Preview Download

Is supplement to: Software: https://github.com/4DNucleome/PartSeg/tree/v0.16.3 (URL)