Cantemist guidelines: neoplasms morphology annotation and mapping to CIEO-3
Creators
- 1. Barcelona Supercomputing Center
- 2. Bitac
Description
The Cantemist corpus was manually annotated by clinical experts following the Cantemist guidelines. These guidelines contain rules for annotating morphology neoplasms in Spanish oncology clinical cases; as well as for mapping these annotations to CIEO-3 (Spanish version of ICD-O-3).
Guidelines were created de novo by clinical experts in three phases:
- First, a zero version of guidelines after the clinical experts reviewed neoplasm morphology annotations in SPACCC corpus see Codiesp guidelines(https://zenodo.org/record/3730567).
- Second, a stable version of guidelines was reached while annotating sample sets of Cantemist corpus iteratively until quality control was satisfactory.
- Third, guidelines are iteratively refined as manual annotation continues.
Please cite if you use this resource:
Miranda-Escalada, A., Farré, E., & Krallinger, M. (2020). Named entity recognition, concept normalization and clinical coding: Overview of the cantemist track for cancer text mining in spanish, corpus, guidelines, methods and results. In Proceedings of the Iberian Languages Evaluation Forum (IberLEF 2020), CEUR Workshop Proceedings.
@inproceedings{miranda2020named,
title={Named entity recognition, concept normalization and clinical coding: Overview of the cantemist track for cancer text mining in spanish, corpus, guidelines, methods and results},
author={Miranda-Escalada, A and Farr{\'e}, E and Krallinger, M},
booktitle={Proceedings of the Iberian Languages Evaluation Forum (IberLEF 2020), CEUR Workshop Proceedings},
year={2020}
}
Resources:
- Web
- Citation: Miranda-Escalada, A., Farré, E., & Krallinger, M. (2020). Named entity recognition, concept normalization and clinical coding: Overview of the cantemist track for cancer text mining in spanish, corpus, guidelines, methods and results. In Proceedings of the Iberian Languages Evaluation Forum (IberLEF 2020), CEUR Workshop Proceedings.
- Gold Standard corpus
- Silver Standard corpus
- YouTube presentations
- Participant codes
For more information, visit https://temu.bsc.es/cantemist/?p=4362 or email us at encargo-pln-life@bsc.es
Notes
Files
GUÍAS MORFOLOGÍA NEOPLÁSICA JUNE 2020.pdf
Files
(877.8 kB)
Name | Size | Download all |
---|---|---|
md5:26a6632f5f86de1e1302ead75c204b19
|
877.8 kB | Preview Download |