There is a newer version of the record available.

Published May 6, 2020 | Version 2.6.0
Software Open

GMOD/Apollo: 2.6.0

Creators

  • 1. Lawrence Berkeley National Lab
  • 2. LBNL
  • 3. Genomancer
  • 4. TISLab, OSU
  • 5. BIPAA/GenOuest
  • 6. OHSU Computational Biology Department
  • 7. Wellcome Sanger Institute
  • 8. WormBase
  • 9. UC Berkeley
  • 10. Gitter
  • 11. EBI
  • 12. Uni of Cambridge / @PomBase
  • 13. @TAMU-CPT

Description

2.6.0 Official Release

Major features include:

  • Removed popups for annotations in favor of annotator panel tabs 2334
  • Implemented gene product and field provenance annotations with evidence and GFF3 export 2371, 2234, 2312, 2424
  • Added GO Annotations to GFF3 export and extended to transcript 2400
  • loadLink can take name of gene in evidence (if JBrowse names have been processed) 2444
  • Add alias to user interface and GFF3 export 2277
  • Split out default GO Evidence Codes from ECO codes 2429

There are numerous other features, bug fixes and infrastructure changes as well. More changes can be found here: https://github.com/GMOD/Apollo/blob/develop/ChangeLog.md

Docker builds are on quay.io and docker hub:

https://quay.io/repository/gmod/apollo?tab=builds https://hub.docker.com/r/gmod/apollo Please review the documentation pages for more details: http://genomearchitect.readthedocs.io/en/latest/

Note: You can find a guide upgrading existing Apollo installations here: https://genomearchitect.readthedocs.io/en/latest/Migration.html

Report issues if found. Active mailing list (apollo@lbl.gov) and google group.

AWS EC2 Community images of Apollo 2.6.0 will be available within the N. Virginia and California regions minimally. Please request on the forum or ticketing system if more are needed.

Files

GMOD/Apollo-2.6.0.zip

Files (94.1 MB)

Name Size Download all
md5:e832f25819669e1d78d23866cfcb9296
94.1 MB Preview Download

Additional details

Related works

Is supplement to
https://github.com/GMOD/Apollo/tree/2.6.0 (URL)