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Molecular Phylogeny of Coprophanaeus (Megaphanaeus) d'Olsoufieff, 1924 (Coleoptera: Scarabaeidae: Scarabaeinae) and the position of C. bellicosus

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Maldaner, Maria E., Vaz-de-Mello, Fernando Z., Takiya, Daniela M., Ferreira, Daniela C. (2020): Molecular Phylogeny of Coprophanaeus (Megaphanaeus) d'Olsoufieff, 1924 (Coleoptera: Scarabaeidae: Scarabaeinae) and the position of C. bellicosus. Insect Systematics & Evolution 51 (2): 241-255, DOI: 10.1163/1876312X-00002198

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urn:lsid:plazi.org:pub:2A33FF86FF84767A0000FFCA33089F17

References

  • Aljanabi, S.M. & Martinez, I. (1997) Universal and rapid salt extraction of high quality genomic DNA for PCR-based techniques. Nucleic Acids Research, 25: 4692-4693.
  • Altekar, G.; Dwarkadas, S.; Huelsenbeck, J.; Ronquist, F. (2004) Parallel Metropolis Coupled Markov Chain Monte Carlo For Bayesian Phylogenetic Inference. Bioinformatics, 20(3): 407-415. doi: 10.1093/bioinformatics/btg427.
  • Arnaud, P. (2002) Les Coleopteres du Monde, Vol. 28. Phanaeini. Dendropaemon, Tetramereia, Homalotarsus, Megatharsis, Diabroctis, Coprophanaeus, Oxysternon, Phanaeus, Sulcophanaeus. Hillside Books, Canterbury, England, 151 pp.
  • Baker, R.H. & DeSalle, R. (1997) Multiple sources of character information and the phylogeny of Hawaiian Drosophilids. Systematic Biology, 46: 654-673.
  • Bazinet, A.L.; Zwickl, D.J.; Cummings, M.P. (2014) A Gateway for Phylogenetic Analysis Powered by Grid Computing Featuring GARLI 2.0. Systematic Biology 63(5): 812-818. doi:10.1093/sysbio/ syu031.
  • Bremer, K. (1994) Branch Support and Tree Stability. Cladistics, 10: 295-304.
  • Cupello, M. & Vaz-de-Mello, F.Z. (2013a) Taxonomic Revision of the South American dung beetle genus Gromphas Brulle, 1837 (Coleoptera: Scarabaeidae: Scarabaeinae: Phanaeini: Gromphadina). Zootaxa, 3722(4): 439-482. http://dx.doi.org/10.11646/zootaxa.3722.4.
  • Cupello, M. & Vaz-de-Mello, F.Z. (2013b) New evidence for the validity of Coprophanaeus (C.) terrali Arnaud, 2002 (Coleoptera: Scarabaeidae: Scarabaeinae: Phanaeini), a dung beetle from Brazil. Zootaxa, 3717(3): 359-368.
  • Cupello, M. & Vaz-de-Mello, F.Z. (2014) Revalidation of the Brazilian Atlantic Forest dung beetle species Coprophanaeus (Metallophanaeus) machadoi (Pereira & d'Andretta, 1955) (Coleoptera: Scarabaeidae: Scarabaeinae: Phanaeini) based on morphological and distributional evidence. Zootaxa, 3869(4): 435-451.
  • Darriba, D.; Taboada, G.L.; Doallo, R.; Posada, D. (2012) jModelTest 2: more models, new heuristics and parallel computing. Nature Methods, 9(8): 772.
  • Edgar, R.C. (2004) Muscle: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics, 5: 113.
  • Edmonds, W.D. (1972) Comparative skeletal morphology, systematic and evolution of the phanaeine dung beetles (Coleoptera: Scarabaeidae). The University of Kansas Science Bulletin, 49: 731-874.
  • Edmonds, W.D. & Zidek, J. (2010) A taxonomic review of the Neotropical genus Coprophanaeus Olsoufieff, 1924 (Coleoptera: Scarabaeidae, Scarabaeinae). Insecta Mundi, 129: 1-111.
  • Erichson, W. F. (1847) Conspectus insectorum coleopterorum, quae in Republica Peruana observata sunt. Archiv fur Naturgeschichte, 13: 67-185.
  • Fabricius, J. C. (1775) Systema Entomologiae: sistens insectorvm classes, ordines, genera, species, adiectis synonymis, locis, descriptionibvs, observationibvs. Officina Libraria Kortii, Flensburgi et Lipsiae, i-xvi; 832 p.
  • Folmer, O.; Black, M.; Hoeh, W.; Lutz, R.; Vrijenhoek R. (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3: 294-299.
  • Genier, F. & Arnaud, P. (2016) Dendropaemon Perty, 1830: taxonomy, systematics and phylogeny of the morphologically most derived phanaeine genus (Coleoptera: Scarabaeidae, Scarabaeinae, Phanaeini). Zootaxa, 4099(1): 001-125.
  • Germar, E.F. 1821. In: Wiedemann, C.R.W. & Germar, E.F. (1821) Neue exotische Kafer. Magazin der Entomologie, 4: 147-149.
  • Google Earth. Google. Viewed in June 2017. <https://www.google.com/earth/>.
  • Gory, H.L. (1844) (no title). 79-80. In: Guerin-Meneville, F.E. 1844. Iconographie du Regne Animal de G. Cuvier, representation d'apres nature de l'une des especes les plus remarquables, et souvent non encore figurees, de chaque genre d'animaux. Insectes. Part 7. J. B. Bailliere; Paris. 576p.
  • Graybeal, A. (1998) Is It Better to Add Taxa or Characters to a Dificult Phylogenetic Problem? Systematic Biology, 47(1): 9-17.
  • Huelsenbeck, J.P. & Ronquist, F. (2001) MRBAYES: Bayesian inference of phylogeny. Bioinformatics, 17: 754-755.
  • Kearse, M.; Moir, R.; Wilson, A.; Stones-Havas, S.; Cheung, M.; Sturrock, S.; Buxton, S.; Cooper, A.; Markowitz, S.; Duran, C.; Thierer, T.; Ashton, B.; Mentjies, P.; Drummond, A. (2012) Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics, 28(12): 1647-1649.
  • Linne, C. (1767) Systema naturae per regna tria naturae secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis. Tomus I, Pars II. Editio duodecima reformata. Salvii; Stockholm. 795 p.
  • MacLeay, W.S. (1819) Horae entomologicae: or essays on the annulose animals. Vol. I. Part I. Containing general observations on the geography, manners, and natural affinities of the insects which compose the genus Scarabaeus of Linnaeus; to which are added a few incidental remarks on the genera Lucanus and Hister of the same author. With an appendix and plates. Bagster, London, 160 p.
  • Maddison, D.R. (2008) Systematics of the North American beetle subgenus Pseudoperyphus (Coleoptera: Carabidae: Bembidion) based upon morphological, chromosomal, and molecular data. Annals of Carnegie Museum, 77: 147-193. doi: 10.2992/0097-4463-77.1.147.
  • Maldaner, M.E.; Cupello, M.; Ferreira, D.C.; Vaz-de-Mello, F.Z. (2017) Type specimens and names assigned to Coprophanaeus (Megaphanaeus) d'Olsoufieff, 1924, the largest New World dung beetles (Coleoptera: Scarabaeidae: Phanaeini). Zootaxa, 4272(1): 83-102.
  • Miller, M.A.; Pfeiffer, W.; Schwartz, T. (2010) 'Creating the CIPRES Science Gateway for inference of large phylogenetic trees' in Proceedings of the Gateway Computing Environments Workshop (GCE), 14 Nov. 2010, New Orleans, LA 1-8p.
  • Monaghan, M.T.; Inward, D.J.G.; Hunt, T.; Vogler, A.P. (2007) A molecular phylogenetic analysis of the Scarabaeinae (dung beetles). Molecular Phylogenetics and Evolution, 45: 674-692.
  • Nevinson, B.G. (1892) Revised synonymic list of species in the genera Phanaeus MacLeay and Oxysternon Castelnau. Privately published, London, 10 p. https://doi.org/10.5962/bhl.title.9416.
  • Olivier, A. (1789) Entomologie, ou histoire naturelle des insects, avec leurs caracteres generiques et specifiques, leur description, leur synonymie, et leur figure enluminee. vol. 1, No. 3, Scarabe. Boudouin; Paris. 190 p. (Note: Each generic section numbered separately.).
  • d'Olsoufieff, G. (1924) Les Phanaeides (Coleoptera - Lamellicornia), Famille Scarabaeidae - Tr. Coprini. Insecta, 13: 4-201.
  • Paynter, R.A. & Traylor, M.A. (1991) Ornithological gazetteer of Brazil. Bird Department, Museum of Comparative Zoology, Harvard University.
  • Pereira, F.S. & d'Andretta, M.A.V. (1955) Novos escarabeideos e novas sinonimias (Col. Scarabaeidae). Papeis Avulsos do Departamento de Zoologia, 12: 247-264.
  • Pessoa, S.B. (1934) Contribuicao para o conhecimento das especies brasileiras do genero Phanaeus (Col. Scarabaeidae). Annaes da Faculdade de Medicina de Sao Paulo, 10: 279-314.
  • Philips, T.K.; Pretorius, E.; Scholtz, C.H. (2004a) A phylogenetic analysis of dung beetles (Scarabaeinae: Scarabaeidae): unrolling an evolutionary history. Invertebrate Systematics, 18: 53-88.
  • Philips, K.; Edmonds, W.D.; Scholtz, C.H. (2004b) A phylogenetic analysis of the New World tribe Phanaeini (Coleoptera: Scarabaeidae: Scarabaeinae): Hypotheses on relationships and origins. Insect Systematics and Evolution, 35: 43-63.
  • Price, D.L. (2009) Phylogeny and biogeography of the dung beetle genus Phanaeus (Coleoptera: Scarabaeidae). Systematic Entomology, 34: 137-150. http://dx.doi.org/10.1111/j.1365-3113.2008.00443.x.
  • Quantum GIS Development Team. (2016) Quantum GIS Geographic Information System. Open Source Geospatial Foundation. Available at: http://qgis.osgeo.org.
  • Rambaut, A.; Suchard, M.A.; Xie, D.; Drummond, A.J. (2014) Tracer v1.6, Available from http://beast .bio.ed.ac.uk/Tracer.
  • Ronquist, F. & Huelsenbeck, J.P. (2003) MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19: 1572-1574.
  • Silva, F.A.B. (2011) First record of Coprophanaeus bellicosus (Olivier) (Coleoptera, Scarabaeidae) in a 'Brejo de Altitude' forest in northeastern Brazil: a historical biogeographical approach. Revista Brasileira de Entomologia, 55(4): 615-617.
  • Simon, C.; Frati, F.; Beckenbach, A.; Crespi, B.; Liu, H.; Flook, P. (1994) Evolution, weighting and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Annals of the Entomological Society of America, 87: 651-701.
  • Sorenson, M.D. & Franzosa, E.A. (2007) TreeRot, version 3. Boston University, Boston, MA.
  • Swofford, D.L. (2002) PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland, Massachusetts.
  • Sturm, J. (1826) Catalog meiner Insecten-Sammlung. Erster Theil. Kafer. Publicacao particular, Nurembergue (Nurnberg), III-VIII, 207p, pl. I-IV.
  • Takiya, D.M.; Tran, P.; Dietrich, C.H.; Moran, N.A. (2006) Co-cladogenesis spanning three phyla: leafhoppers (Insecta: Hemiptera: Cicadellidae) and their dual bacterial symbionts. Molecular Ecology, 15: 4175-4191. doi: 10.1111/j.1365-294X.2006.03071.x.
  • Tarasov, S. (2016) Morphology, fossils and molecules elucidate the mystery of dung beetle (Coleoptera: Scarabaeidae: Scarabaeinae) evolution using novel Bayesian and parsimony approaches. Tese de Doutorado, Universidade de Oslo. Available at: https://www.duo.uio.no/handle/10852/48772 (permanent link).
  • Tarasov, S. & Dimitrov, D. (2016) Multigene phylogenetic analysis redefines dung beetles relationships and classification (Coleoptera: Scarabaeidae: Scarabaeinae). BMC Evolutionary Biology, 16: 257.
  • Tarasov, S. & Genier, F. (2015) Innovative and Parsimony Phylogeny of Dung Beetles (Coleoptera, Scarabaeidae, Scarabaeinae) Enhanced by Ontology-Based Partitioning of Morphological Characters. PLoS ONE, 10(3): 1-86. http://dx.doi.org/10.1371/journal.pone.0116671.
  • Van der Auwera, G.; Chapelle, S.; De Wachter, R., (1994) Structure of the large ribosomal subunit RNA of Phytophthora megasperma, and phylogeny of the oomycetes. FEBS Letters, 338: 133-136.
  • Weber, F., (1801) Observationes entomologicae, continentes novorum quae condidit generum characteres, et nuper detectarum specierum descriptiones. Impensis Bibliopolii Academici Novi, Kiliae. xii + 116 p.
  • Xia, X. (2013) DAMBE5: a comprehensive software package for data analysis in molecular biology and evolution. Molecular Biology and Evolution, 30: 1720-1728.
  • Xia, X. & Lemey, P. (2009) Assessing substitution saturation with DAMBE. In: P Lemey, M Salemi, AM Vandamme, editors. The phylogenetic handbook. Cambridge: Cambridge University Press, 615-630p.
  • Xia, X.H.; Xie, Z.; Salemi, M.; Chen, L.; Wang, Y. (2003) An index of substitution saturation and its application. Molecular Phylogenetics and Evolution, 26: 1-7.
  • Zwickl, D.J. (2006) Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph.D. dissertation, The University of Texas at Austin, 115 p.