Published December 11, 2019 | Version v2
Dataset Open

Influence of Paleolithic Range Contraction, Admixture and Long-Distance Dispersal on Genetic Gradients of Modern Humans in Asia

  • 1. Department of Biochemistry, Genetics and Immunology, University of Vigo, Vigo, Spain
  • 2. GeoHealth group, Institute of Global Health, University of Geneva, 1202 Geneva, Switzerland
  • 3. Laboratory of Anthropology, Genetics and Peopling History, Department of Genetics and Evolution – Anthropology Unit, University of Geneva, 1205 Geneva, Switzerland

Description

Each folder is identified according to the scenario, and contains another folder with the input files (files *.txt, *.par, *.sam, *.asc) to simulate it, the corresponding simulated genetic data (files *.arp) and the derived PC maps (files *.png). A file with the locations of the samples is also included (coord.txt).

* Pure Paleolithic expansion * 
The folder “Paleo” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a pure Paleolithic expansion, ignoring the range contraction induced by the LGM and LDD events.

* Pure Paleolithic expansion considering the range contraction induced by the LGM * 
The folder “Paleo_REC” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a pure Paleolithic expansion suffering the range contraction induced by the LGM.

 * Pure Paleolithic expansion considering long-distance dispersal (LDD) events * 
The folder “Paleo_LDD” contains the input files (INFILES), the genetic data  and the corresponding PC maps simulated under the scenario of a pure Paleolithic expansion considering LDD events. 

* Paleolithic expansion followed by two Neolithic expansions (IR=0) from Middle East and East Asia considering the range contraction induced by the LGM * 
The folder “Paleo2NeoIR0_REC” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by two Neolithic expansions (IR=0) from Middle East and later from East Asia suffering the range contraction induced by the LGM. 

* Paleolithic expansion followed by two Neolithic expansions (IR=0) from Middle East and East Asia considering LDD events * 
The folder “Paleo2NeoIR0_LDD” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by two Neolithic expansions from Middle East and later from East Asia considering LDD events. 

* Paleolithic expansion followed by a single Neolithic expansion (IR=0) from Middle East considering the range contraction induced by the LGM * 
The folder “Paleo_MiddleEastNeoIR0_REC” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by a single Neolithic expansions (IR=0) from Middle East suffering the range contraction induced by the LGM. 

* Paleolithic expansion followed by a single Neolithic expansion (IR=0) from East Asia considering the range contraction induced by the LGM * 
The folder “Paleo_EastAsiaNeoIR0_REC” contains the input files (INFILES) and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by a single Neolithic expansion (IR=0) from East Asia suffering the range contraction induced by the LGM. 

* Paleolithic expansion followed by a single Neolithic expansion (IR=0) from Middle East considering LDD events * 
The folder “Paleo_MiddleEastNeoIR0_REC” contains the input files  (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by a single Neolithic expansions (IR=0) from Middle East considering LDD events. 

* Paleolithic expansion followed by a single Neolithic expansion (IR=0) from East Asia considering LDD events * 
The folder “Paleo_EastAsiaNeoIR0_REC” contains the input files (INFILES) the genetic data and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by a single Neolithic expansion (IR=0) from East Asia considering LDD events. 

* Paleolithic expansion followed by a single Neolithic expansion (IR=0.04) from Middle East considering the range contraction induced by the LGM * 
The folder “Paleo_MiddleEastNeoIR004_REC” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by a single Neolithic expansion (IR=0.04) from East Asia suffering the range contraction induced by the LGM. 

* Paleolithic expansion followed by a single Neolithic expansion (IR=0.04) from East Asia considering the range contraction induced by the LGM * 
The folder “Paleo_EastAsiaNeoIR0_REC” contains the input files (INFILES), the genetic data  and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by a single Neolithic expansions (IR=0.04) from East Asia suffering the range contraction induced by the LGM. 

* Paleolithic expansion followed by a single Neolithic expansion (IR=0.04) from Middle East considering LDD events * 
The folder “Paleo_MiddleEastNeoIR004_REC” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by a single Neolithic expansion (IR=0.04) from East Asia considering LDD events. 

* Paleolithic expansion followed by a single Neolithic expansion (IR=0.04) from East Asia considering LDD events * 
The folder “Paleo_EastAsiaNeoIR0_REC” contains the input files  (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by a single Neolithic expansions (IR=0.04) from East Asia considering LDD events.

Files

coord.txt

Files (269.1 MB)

Name Size Download all
md5:bf6d660c8d4fd68ae1aefc2e8a08b597
29.7 kB Preview Download
md5:40caf15df1833127eea676acf2b8eecc
11.3 MB Preview Download
md5:2b83f3896127abc0931ff58a0e5bc77b
25.1 MB Preview Download
md5:07ec80c246c2c221196ba81732288306
14.3 MB Preview Download
md5:2552af35d5254bb540609e77ea4d8b47
24.5 MB Preview Download
md5:7227f9451381a352e27cfe19d6dd447d
23.1 MB Preview Download
md5:ceb7e2075a1ca4675f3ae4b529d52f66
26.7 MB Preview Download
md5:08fb5656df80d0e6f3fc1d7b5a02dfc1
16.7 MB Preview Download
md5:20587f6c4c1431f2763b98b7cdf42f96
22.4 MB Preview Download
md5:c457dca8f4f10bbb9da46310ed8bb5ce
24.2 MB Preview Download
md5:bdca53a21af9c763908d3fa15d1e5594
23.8 MB Preview Download
md5:bed709042b84dc3374bea099dbceac5a
27.9 MB Preview Download
md5:4da532d8f0ee283bb9fc6ed0a9b04134
18.0 MB Preview Download
md5:a4786b1d014bfe2188f489192a11f9f7
11.2 MB Preview Download
md5:8d0755589b425905593edb29c5dade72
5.4 kB Preview Download