Algorithms for Reconstruction of Undersampled Atomic Force Microscopy Images Dataset

This deposition contains the results from a simulation of reconstructions of undersampled atomic force microscopy (AFM) images. The reconstructions were obtained using a variety of interpolation and reconstruction methods.

The deposition consists of:

1. An  HDF5 database containing the results from simulations of reconstructions of undersampled atomic force microscopy images (reconstruction_goblet_ID_0_of_1.hdf5).
2. The Python script which was used to create the database (reconstruction_goblet.py).
3. Auxillary Python scripts needed to run the simulations (optim_reconstructions.py, it_reconstruction.py, interp_reconstructions.py, gamp_reconstructions.py, and utils.py).
4. MD5 and SHA256 checksums of the database and Python script files (reconstruction_goblet.MD5SUMS, reconstruction_goblet.SHA256SUMS).

The HDF5 database is licensed under CC BY 4.0 (http://creativecommons.org/licenses/by/4.0/) . Since the CC BY 4.0 license is not well suited for source code, the Python script is licensed under the BSD 2-Clause license (http://opensource.org/licenses/BSD-2-Clause) .

The files are provided as-is with no warranty as detailed in the above mentioned licenses.

The simulation results in the database are based on "Atomic Force Microscopy Images of Cell Specimens" and "Atomic Force Microscopy Images of Various Specimens" by Christian Rankl licensed under CC BY 4.0 (http://creativecommons.org/licenses/by/4.0/). The original images are available at http://dx.doi.org/10.5281/zenodo.17573 and http://dx.doi.org/10.5281/zenodo.60434. The original images are provided as-is without warranty of any kind. Both the original images as well as adapted images are part of the dataset.