Published March 30, 2020
| Version v0.5
Software
Open
Bioinformatics data analysis and visualization toolkit
Description
v0.5
v0.5 has the following updates and changes
- Linear regression analysis added in
analys.stat
class volcano
,involcano
,ma
andheatmap
functions moved to newvisuz.gen_exp
class- In
volcano
, parameters for new box type labeling and threshold grid lines added corr_mat
updated for new colormaps and moved to stat class- To visualize the graph in the console itself (e.g. Jupyter notebook), show parameter added
- Pandas dataframe input added for
volcano
,involcano
,corr_mat
,ma
,ttsam
, andchisq
ttsam
andchisq
moved toanalys.stat
class- graph control parameters added for
volcano
,involcano
,ma
, andheatmap
- documentation can also be accessed at https://reneshbedre.github.io/blog/howtoinstall.html
help
will be deprecated in a future release- fixed the NumPy bug in
visuz.stat.bardot
. Theint
cast added to generate the number of samples, which does not accept float (See details of NumPy bug: https://github.com/numpy/numpy/issues/15345)
Files
reneshbedre/bioinfokit-v0.5.zip
Files
(277.4 kB)
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Additional details
Related works
- Is supplement to
- https://github.com/reneshbedre/bioinfokit/tree/v0.5 (URL)