Published February 19, 2020
| Version v2
Other
Open
Platynereis EM network weights
Description
Weights for trained Convolutional Neural Networks used in the publication Whole-body integration of gene expression and single-cell morphology. We provide weights for 3d U-Nets segmenting the following structures:
- cell membranes
- cilia
- cuticle
- nuclei
For details on how to use these networks were trained, see https://github.com/platybrowser/platybrowser-backend/tree/master/segmentation. The training data is available at https://doi.org/10.5281/zenodo.3675220.
This version provides the state dicts rather than pickled models, which are provided in the first version.