Published March 1, 2020
| Version v2
Dataset
Open
Antarctic endolithic bacterial metagenome-assembled genomes
- 1. University of Tuscia, Italy
- 2. Research and Innovation Centre, Fondazione Edmund Mach (FEM), San Michele all'Adige, Italy
- 3. Department of Energy Joint Genome Institute, Walnut Creek, California, USA
Description
Bacterial assembled genomes and annotation data from the Antarctic cryptoendolithic communities collected during the XXXI (2015-16) Italian Antarctic Expedition.
The dataset consists of 4 zip archives and 3 files (comma-separated values). Here is a brief summary of their contents:
- MAGs: high quality (HQ) and medium quality (MQ) bacterial metagenome assembled genomes.
- MAGs_metadata: completeness, contamination, length, N50, GTDB classification for each MAG.
- MAGs_HQ_CDS: translated coding sequences for each high quality MAG.
- MAGs_HQ_Annotation: EggNOG annotation files. For each high quality MAG, the following files are included:
- eggnog.emapper.annotations: the final EggNOG annotation;
- eggnog.emapper.hmm_hits: list of significant hits to eggNOG Orthologous Groups
- eggnog.emapper.seed_orthologs: best match of each query within the best Orthologous Group (OG) reported in the eggnog.emapper.hmm_hits file.
- Jiangella_Antarctica: Candidatus Jiangella antarctica representative genome (UniValnordMG_2_bin.36.fa) and the extracted ribosomal RNA genes (rRNA.fasta).
- Order_MSA: protein multiple sequence alignments using the 120 GTDB bacterial marker genes. These alignments were used to estimate divergence times on orders containing at least 4 CBS, for a total of 19 orders.
- Samples_accession: table that relates to the NCBI deposition of the shotgun metagenomes, the following info are included:
- NCBI Sequence Read Archive (SRA)
- BioProject accession numbers
- JGI Integrated Microbial Genomes & Microbiomes site IDs
- N50 values
- Metadata
- Samples_metadata: geographic coordinates, temperature, relative humidity and sampling date are reported.
Files
Jiangella_Antarctica.zip
Files
(872.8 MB)
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