Published January 31, 2020
| Version v0.5
Software
Open
3DGenomes/TADbit: TADbit 2019
Authors/Creators
- 1. Computational Biology - BSC
- 2. Centro Regulacion Genomica (CRG)
- 3. ICREA-CNAG-CRG
- 4. Gitter
Description
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
Files
3DGenomes/TADbit-v0.5.zip
Files
(49.7 MB)
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Additional details
Related works
- Is supplement to
- https://github.com/3DGenomes/TADbit/tree/v0.5 (URL)